Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq393 156 6e-33
>seq393
Length=255347
Score = 156 bits (172), Expect = 6e-33
Identities = 589/912 (65%), Gaps = 34/912 (4%)
Strand=Plus/Minus
Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040
|||||||||||| || | |||| | | | ||||| || || | || ||||||| |
Sbjct 192052 TTCGAACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGT 191993
Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100
||| || |||| || | || || ||||| || | || |||||||| ||||| ||
Sbjct 191992 CCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAA 191933
Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160
| ||| | || | | ||||| ||||| ||||| || || ||||| ||||
Sbjct 191932 GAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAA-GCCAA 191874
Query 66161 A-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219
| | |||| ||||| || || | ||| ||||| | | || || || ||||| || |
Sbjct 191873 AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCCAC 191814
Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279
|||| || | ||| | ||||||||| || || || | | ||| ||||| | ||| || |
Sbjct 191813 CCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTG 191754
Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT-AGA 66338
|||| || ||||| ||| || ||| || | ||||| || | | | | |||
Sbjct 191753 ATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGAT-TCGGTGGACGTTGAGA 191695
Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398
|| || || || || | || ||||| || ||||| || | || || ||||||||
Sbjct 191694 CCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCG 191635
Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 66456
|| || || || ||| |||||| | || || ||| ||||| | ||||| | |
Sbjct 191634 TCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATG--GTG 191577
Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 66515
| || || || || | ||| || || ||||| ||||| | |||| || | |||| | |
Sbjct 191576 TGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAG-TCG 191518
Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTA 66573
|| |||||||| || || || | ||| | || || || || || || ||||| |
Sbjct 191517 TAAGTCTCAATGGCCTTTTCAATGT--CATCGCCGTGTATGCCGACGGCAACTCGCATGA 191460
Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633
|||||| || || | || | | |||| |||| | | |||||| || |
Sbjct 191459 GCATGTGTTGTGGGCGCTCGGCAACCTTGCCATTTACACGGAGGAGGTAGGACCGCTCGA 191400
Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 66693
|| || || || || | | ||| |||||||| ||||| | ||| |||||||||
Sbjct 191399 GCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCTCGGTCGTATACTATAGCCGAGTTGA 191340
Query 66694 GTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGA--ATG 66751
| | || | || | || || | || | || || ||||||| |||
Sbjct 191339 GCTCCTCTGCGTGTTCCTGAATGACTT---TG-------TAGACGTAGTCGGAGATCATG 191290
Query 66752 --------TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTA 66803
|| || || || || ||||| |||||| | | || || || || |
Sbjct 191289 GGCTGCCTCTTGCCGTTCTTGGGGTTGACGTAGTTGTAGAGTTCGTCTATGACGGCCGAG 191230
Query 66804 AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCA 66863
||| | || ||||| | ||||| |||||||| ||||| || | ||||| | ||||||
Sbjct 191229 AATTGCTTCTTTGTCTGCTTGTGGAGATTTGACACGGCGATACGCGCGGCGAGAATGGCG 191170
Query 66864 TAATCCGGATGT 66875
|| || ||||||
Sbjct 191169 TAGTCGGGATGT 191158
Score = 96.9 bits (106), Expect = 5e-15
Identities = 207/303 (68%), Gaps = 5/303 (2%)
Strand=Plus/Minus
Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886
|||| ||| | ||||||||||| || ||||| |||| | ||||| || ||||||||
Sbjct 193215 TCCTGGTCGACGGTGAATTGAATAGGGGCGGAGGCGGCCATGGTACGGAGGTAGTACATG 193156
Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 64946
||||| || ||||| || ||||||| ||| ||||| ||| | ||| |
Sbjct 193155 CCCGTCTTAAGACCAAGCTTCCATCCAGCAAAGTGCATCGACGTGATCTTGCCCATGGTA 193096
Query 64947 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006
|| || || ||||| |||| || || || ||||| ||||| || | ||| |||
Sbjct 193095 GGCTCCTTCATGTGGATGTTCAACGACTGGGACTGGTCGATAAAGGCACCACGGTCGGCA 193036
Query 65007 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 65065
||||| | ||||| | || | |||||||||| ||| || |||| ||| ||| |
Sbjct 193035 GCCATCTCGATGATTCTGCGCTGCGAGATTTCCCAAACAGTCTTGTAAAGCTC-CTTGGT 192977
Query 65066 ATCTTCTGGAAGGTT-TGTATTC-TG-AATGGATCCACCATCTGCCATAATCCTATTCTT 65122
|| || || | || | |||| || |||||| ||||| || || || || | |||||
Sbjct 192976 CTCATCGGGGATATTGGGAATTCGTGCAATGGAACCACCCTCGGCGATGATGCGGTTCTT 192917
Query 65123 GAT 65125
||
Sbjct 192916 CAT 192914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658169393955760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |