Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq393 156 6e-33 >seq393 Length=255347 Score = 156 bits (172), Expect = 6e-33 Identities = 589/912 (65%), Gaps = 34/912 (4%) Strand=Plus/Minus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 |||||||||||| || | |||| | | | ||||| || || | || ||||||| | Sbjct 192052 TTCGAACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGT 191993 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 66100 ||| || |||| || | || || ||||| || | || |||||||| ||||| || Sbjct 191992 CCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAA 191933 Query 66101 TAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 66160 | ||| | || | | ||||| ||||| ||||| || || ||||| |||| Sbjct 191932 GAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAA-GCCAA 191874 Query 66161 A-ATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 | | |||| ||||| || || | ||| ||||| | | || || || ||||| || | Sbjct 191873 AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCCAC 191814 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279 |||| || | ||| | ||||||||| || || || | | ||| ||||| | ||| || | Sbjct 191813 CCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTG 191754 Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT-AGA 66338 |||| || ||||| ||| || ||| || | ||||| || | | | | ||| Sbjct 191753 ATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGAT-TCGGTGGACGTTGAGA 191695 Query 66339 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 66398 || || || || || | || ||||| || ||||| || | || || |||||||| Sbjct 191694 CCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCG 191635 Query 66399 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 66456 || || || || ||| |||||| | || || ||| ||||| | ||||| | | Sbjct 191634 TCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATG--GTG 191577 Query 66457 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 66515 | || || || || | ||| || || ||||| ||||| | |||| || | |||| | | Sbjct 191576 TGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAG-TCG 191518 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTA 66573 || |||||||| || || || | ||| | || || || || || || ||||| | Sbjct 191517 TAAGTCTCAATGGCCTTTTCAATGT--CATCGCCGTGTATGCCGACGGCAACTCGCATGA 191460 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||||| || || | || | | |||| |||| | | |||||| || | Sbjct 191459 GCATGTGTTGTGGGCGCTCGGCAACCTTGCCATTTACACGGAGGAGGTAGGACCGCTCGA 191400 Query 66634 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 66693 || || || || || | | ||| |||||||| ||||| | ||| ||||||||| Sbjct 191399 GCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCTCGGTCGTATACTATAGCCGAGTTGA 191340 Query 66694 GTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAAATAATCGGAGA--ATG 66751 | | || | || | || || | || | || || ||||||| ||| Sbjct 191339 GCTCCTCTGCGTGTTCCTGAATGACTT---TG-------TAGACGTAGTCGGAGATCATG 191290 Query 66752 --------TTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTA 66803 || || || || || ||||| |||||| | | || || || || | Sbjct 191289 GGCTGCCTCTTGCCGTTCTTGGGGTTGACGTAGTTGTAGAGTTCGTCTATGACGGCCGAG 191230 Query 66804 AATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGCA 66863 ||| | || ||||| | ||||| |||||||| ||||| || | ||||| | |||||| Sbjct 191229 AATTGCTTCTTTGTCTGCTTGTGGAGATTTGACACGGCGATACGCGCGGCGAGAATGGCG 191170 Query 66864 TAATCCGGATGT 66875 || || |||||| Sbjct 191169 TAGTCGGGATGT 191158 Score = 96.9 bits (106), Expect = 5e-15 Identities = 207/303 (68%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 64827 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 64886 |||| ||| | ||||||||||| || ||||| |||| | ||||| || |||||||| Sbjct 193215 TCCTGGTCGACGGTGAATTGAATAGGGGCGGAGGCGGCCATGGTACGGAGGTAGTACATG 193156 Query 64887 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 64946 ||||| || ||||| || ||||||| ||| ||||| ||| | ||| | Sbjct 193155 CCCGTCTTAAGACCAAGCTTCCATCCAGCAAAGTGCATCGACGTGATCTTGCCCATGGTA 193096 Query 64947 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 65006 || || || ||||| |||| || || || ||||| ||||| || | ||| ||| Sbjct 193095 GGCTCCTTCATGTGGATGTTCAACGACTGGGACTGGTCGATAAAGGCACCACGGTCGGCA 193036 Query 65007 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 65065 ||||| | ||||| | || | |||||||||| ||| || |||| ||| ||| | Sbjct 193035 GCCATCTCGATGATTCTGCGCTGCGAGATTTCCCAAACAGTCTTGTAAAGCTC-CTTGGT 192977 Query 65066 ATCTTCTGGAAGGTT-TGTATTC-TG-AATGGATCCACCATCTGCCATAATCCTATTCTT 65122 || || || | || | |||| || |||||| ||||| || || || || | ||||| Sbjct 192976 CTCATCGGGGATATTGGGAATTCGTGCAATGGAACCACCCTCGGCGATGATGCGGTTCTT 192917 Query 65123 GAT 65125 || Sbjct 192916 CAT 192914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658169393955760