Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq225 104 2e-17 seq403 95.1 1e-14 >seq225 Length=197037 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || |||| ||| | || || || | |||||||| || || ||||| || || Sbjct 138920 TGTCCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCT 138861 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 | || | |||||| || || ||||||||| |||| ||||||||||| || ||| Sbjct 138860 GAGAGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGA 138801 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || ||||| || ||||| ||| || |||| | || | |||||| ||| ||| Sbjct 138800 GGGATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTGTCGATGGTGTCGCTGGATTCC 138741 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||| | ||||| || || | || || ||||| |||||||| Sbjct 138740 ACCTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 138691 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||||||| || | |||||||||||| |||||| Sbjct 138659 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCGAGCTGCTTACCA 138600 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 || |||| ||||| || || || ||||| || || || ||||| ||| | || | || Sbjct 138599 GCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTC-CTGAATCTTGGACTT 138541 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||| | | ||| || || | || | |||||||| |||| || Sbjct 138540 GACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTCTTGCCAGTCAGGGT 138481 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 138480 CTTGACGAAGATCTGCATA 138462 >seq403 Length=285126 Score = 95.1 bits (104), Expect = 1e-14 Identities = 340/524 (65%), Gaps = 17/524 (3%) Strand=Plus/Minus Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608 ||||| || | ||||| |||| ||||||||| | ||||||| || | || || Sbjct 107913 GTTCCCTGCATCCGCAAGAAGGCTGATTGGGCTCTTCGATGGATCTCTGACAAGAACTCC 107854 Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668 || |||||| | ||||| ||||||||||| || || ||| | || || ||| Sbjct 107853 ACCTTTGCCAACCGTCTTGTCGCGTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTTCA 107794 Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727 || || | || || | | || || | ||| | | |||||||| || || || ||| Sbjct 107793 TTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATGCCCGGTCTTACCTTCTCCAA 107735 Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATTATAATA 52786 |||| | || || || ||||| || |||||||| || ||||| || || | || | Sbjct 107734 CGAGCTCATCTCTCGTGACGAGGGTATGCACACCGACTTTGCCTGCCTGCTCTTCT---- 107679 Query 52787 CGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCT----AGAC-ATGTTTAAAGAGGC 52841 | | | | || || | | | | || | || || | || | | || || Sbjct 107678 CTCTCCTCAAC----AACCGCCCCA-GCAAGGCTGCTGTCGAGGCTATCATCACCGAAGC 107624 Query 52842 CGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAA 52901 ||||| ||||| | ||||| | | ||||| | || | | | |||||||| Sbjct 107623 TGTCGAGATTGAGCAGGAGTTCCTCAGCGACGCGCTTCCTTGCGCTCTTCTCGGCATGAA 107564 Query 52902 CGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGG 52961 ||| || | |||||| ||||||| ||||| || || ||| | ||| | | ||||| Sbjct 107563 CGCCACTCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTGCTCCTTGCTCTCGG 107504 Query 52962 TCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGA 53021 | || || ||||| || || |||||||| || ||| | ||||| ||||| | Sbjct 107503 CAACCCCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTGC 107444 Query 53022 GGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065 ||||| || ||||| ||||||| ||||| || || ||| ||| Sbjct 107443 TGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAAA 107400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496061432868800