Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq225 104 2e-17
seq403 95.1 1e-14
>seq225
Length=197037
Score = 104 bits (114), Expect = 2e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
|| || || |||| ||| | || || || | |||||||| || || ||||| || ||
Sbjct 138920 TGTCCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCT 138861
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
| || | |||||| || || ||||||||| |||| ||||||||||| || |||
Sbjct 138860 GAGAGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGA 138801
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| ||||| || ||||| ||| || |||| | || | |||||| ||| |||
Sbjct 138800 GGGATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTGTCGATGGTGTCGCTGGATTCC 138741
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
||||| | ||| | ||||| || || | || || ||||| ||||||||
Sbjct 138740 ACCTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 138691
Score = 86.0 bits (94), Expect = 6e-12
Identities = 140/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Minus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || ||||||| || | |||||||||||| ||||||
Sbjct 138659 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCGAGCTGCTTACCA 138600
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686
|| |||| ||||| || || || ||||| || || || ||||| ||| | || | ||
Sbjct 138599 GCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTC-CTGAATCTTGGACTT 138541
Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746
| | || | ||||| | | ||| || || | || | |||||||| |||| ||
Sbjct 138540 GACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTCTTGCCAGTCAGGGT 138481
Query 139747 TTTTACGAATATTTGCATA 139765
|| ||||| || ||||||
Sbjct 138480 CTTGACGAAGATCTGCATA 138462
>seq403
Length=285126
Score = 95.1 bits (104), Expect = 1e-14
Identities = 340/524 (65%), Gaps = 17/524 (3%)
Strand=Plus/Minus
Query 52549 GTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACGACAAAGCC 52608
||||| || | ||||| |||| ||||||||| | ||||||| || | || ||
Sbjct 107913 GTTCCCTGCATCCGCAAGAAGGCTGATTGGGCTCTTCGATGGATCTCTGACAAGAACTCC 107854
Query 52609 ACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGtttttttCGGGTAGT 52668
|| |||||| | ||||| ||||||||||| || || ||| | || || |||
Sbjct 107853 ACCTTTGCCAACCGTCTTGTCGCGTTTGCCGCCGTTGAGGGTATCTTCTTCAGCGGTTCA 107794
Query 52669 TTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACGTTTAGCAA 52727
|| || | || || | | || || | ||| | | |||||||| || || || |||
Sbjct 107793 TTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGTC-TCATGCCCGGTCTTACCTTCTCCAA 107735
Query 52728 CGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TATTATAATA 52786
|||| | || || || ||||| || |||||||| || ||||| || || | || |
Sbjct 107734 CGAGCTCATCTCTCGTGACGAGGGTATGCACACCGACTTTGCCTGCCTGCTCTTCT---- 107679
Query 52787 CGCGCGTTAAAGAAAAATTGTCATATGAAAAAATTCT----AGAC-ATGTTTAAAGAGGC 52841
| | | | || || | | | | || | || || | || | | || ||
Sbjct 107678 CTCTCCTCAAC----AACCGCCCCA-GCAAGGCTGCTGTCGAGGCTATCATCACCGAAGC 107624
Query 52842 CGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGGGCATGAA 52901
||||| ||||| | ||||| | | ||||| | || | | | ||||||||
Sbjct 107623 TGTCGAGATTGAGCAGGAGTTCCTCAGCGACGCGCTTCCTTGCGCTCTTCTCGGCATGAA 107564
Query 52902 CGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGCAGCTCGG 52961
||| || | |||||| ||||||| ||||| || || ||| | ||| | | |||||
Sbjct 107563 CGCCACTCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTGCTCCTTGCTCTCGG 107504
Query 52962 TCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATATCGCTCGA 53021
| || || ||||| || || |||||||| || ||| | ||||| ||||| |
Sbjct 107503 CAACCCCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCTCGCTTGC 107444
Query 53022 GGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTACAAAA 53065
||||| || ||||| ||||||| ||||| || || ||| |||
Sbjct 107443 TGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAAA 107400
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496061432868800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |