Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq393 190 3e-43 >seq393 Length=255347 Score = 190 bits (210), Expect = 3e-43 Identities = 594/905 (66%), Gaps = 20/905 (2%) Strand=Plus/Minus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 |||||||||||| || | |||||| | | ||||| || |||| || ||||||| | Sbjct 192052 TTCGAACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGT 191993 Query 79920 CCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 79979 ||| || || | || | || || ||||| || | || |||||||| ||||| || Sbjct 191992 CCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAA 191933 Query 79980 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 80039 ||||| | || | | |||||| ||||| ||||| || || ||||| |||| Sbjct 191932 GAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAA-GCCAA 191874 Query 80040 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTC 80098 | | ||||| ||||| || || | ||| ||||| | | || || || ||||| || | Sbjct 191873 AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCCAC 191814 Query 80099 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 80158 |||| || | ||| | ||||||||| || || || | | ||| ||||| | ||| || | Sbjct 191813 CCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTG 191754 Query 80159 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGA 80217 |||| || ||||| ||| || ||| || ||||||| || | | | | ||| Sbjct 191753 ATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGAT-TCGGTGGACGTTGAGA 191695 Query 80218 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 80277 || || || || || | || ||||| || ||||| || | || || |||||||| Sbjct 191694 CCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCG 191635 Query 80278 TCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 80335 || ||||| || || |||||| | || || ||| ||||| | ||||| | | Sbjct 191634 TCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATG--GTG 191577 Query 80336 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTG 80394 | || || || || | ||| || || ||||| ||||| | |||| |||| |||| | | Sbjct 191576 TGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAG-TCG 191518 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTG--ATGAATTCCTACCGCGACACGCATTA 80452 || |||||||| || ||| || | ||| | || || || || || || ||||| | Sbjct 191517 TAAGTCTCAATGGCCTTTTCAATGT--CATCGCCGTGTATGCCGACGGCAACTCGCATGA 191460 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCA 80512 |||||| || || | || | | |||| ||||| | | ||| || || | Sbjct 191459 GCATGTGTTGTGGGCGCTCGGCAACCTTGCCATTTACACGGAGGAGGTAGGACCGCTCGA 191400 Query 80513 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 80572 || || || || || | | ||| |||||||| ||||| | ||| ||||||||| Sbjct 191399 GCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCTCGGTCGTATACTATAGCCGAGTTGA 191340 Query 80573 GTTTATCCTTATATTTGTTAACTACATCCATGGTGA--TACT-TGAAATAATCGGAGAAT 80629 | | || | || | || || | || || || | || || || || Sbjct 191339 GCTCCTCTGCGTGTTCCTGAATGACTT---TGTAGACGTAGTCGGAGATCATGGGCTGCC 191283 Query 80630 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 80689 || || || || || || || |||||| | | || || || || | ||| | | Sbjct 191282 TCTTGCCGTTCTTGGGGTTGACGTAGTTGTAGAGTTCGTCTATGACGGCCGAGAATTGCT 191223 Query 80690 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAATGGCATAATCTG 80749 | ||||| | |||||| |||||||| ||||| || | ||||| | |||||| || || | Sbjct 191222 TCTTTGTCTGCTTGTGGAGATTTGACACGGCGATACGCGCGGCGAGAATGGCGTAGTCGG 191163 Query 80750 GATGT 80754 ||||| Sbjct 191162 GATGT 191158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718265082958960