Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq393 181 1e-40 >seq393 Length=255347 Score = 181 bits (200), Expect = 1e-40 Identities = 592/905 (65%), Gaps = 20/905 (2%) Strand=Plus/Minus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 |||||||||||| || | ||| | | | ||||| || || || || ||||||| | Sbjct 192052 TTCGAACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGT 191993 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| || || | || | || || ||||| || | || |||||||| ||||| || Sbjct 191992 CCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAA 191933 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 ||||| | || | | |||||| ||||| ||||| || || ||||| |||| Sbjct 191932 GAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAA-GCCAA 191874 Query 72123 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTC 72181 | | ||||| ||||| || || | ||| ||||| | | || || || ||||| || | Sbjct 191873 AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCCAC 191814 Query 72182 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 72241 |||| || | ||| | ||||||||| || || || | | ||| ||||| | ||| || | Sbjct 191813 CCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTG 191754 Query 72242 ATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT-AGA 72300 ||| || ||||| ||| || ||| || ||||||| || | | | | | ||| Sbjct 191753 ATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGAT-TCGGTGGACGTTGAGA 191695 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || || || || || | || ||||| || ||||| || | || || |||||||| Sbjct 191694 CCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCG 191635 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 72418 || || || || ||| |||||| | || || ||| ||||| | ||||| | | Sbjct 191634 TCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATG--GTG 191577 Query 72419 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACA-GTAGATTG 72477 | || || || || | ||| || || ||||| ||||| | |||| |||| |||| | | Sbjct 191576 TGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAG-TCG 191518 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTG--ATGTATTCCTACCGCGACACGCATTA 72535 || |||||||| || ||| || | ||| | ||||| || || || || ||||| | Sbjct 191517 TAAGTCTCAATGGCCTTTTCAATGT--CATCGCCGTGTATGCCGACGGCAACTCGCATGA 191460 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 ||| || || || | || | | |||| ||||| | | |||||| || | Sbjct 191459 GCATGTGTTGTGGGCGCTCGGCAACCTTGCCATTTACACGGAGGAGGTAGGACCGCTCGA 191400 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 72655 || || || || || | | ||| |||||||| ||||| | ||| |||| |||| Sbjct 191399 GCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCTCGGTCGTATACTATAGCCGAGTTGA 191340 Query 72656 GTTTATCCTTATATTTGTTAACTATATCCATGGTGA--TACT-TGAAATAATCGGAGAAT 72712 | | || | || | | || | || || || | || || || || Sbjct 191339 GCTCCTCTGCGTGTTCCTGA---ATGACTTTGTAGACGTAGTCGGAGATCATGGGCTGCC 191283 Query 72713 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 72772 || || || || || || || |||||| | | || || || || | ||| | | Sbjct 191282 TCTTGCCGTTCTTGGGGTTGACGTAGTTGTAGAGTTCGTCTATGACGGCCGAGAATTGCT 191223 Query 72773 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCTG 72832 | ||||| | |||||| |||||||| ||||| || | ||||| |||||||| || || | Sbjct 191222 TCTTTGTCTGCTTGTGGAGATTTGACACGGCGATACGCGCGGCGAGAATGGCGTAGTCGG 191163 Query 72833 GATGT 72837 ||||| Sbjct 191162 GATGT 191158 Score = 104 bits (114), Expect = 3e-17 Identities = 202/292 (69%), Gaps = 5/292 (2%) Strand=Plus/Minus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847 ||||| ||| | || || ||||| || | ||| ||||| | ||||| || |||||||| Sbjct 193216 TTCCTGGTCGACGGTGAATTGAATAGGGGCGGAGGCGGCCATGGTACGGAGGTAGTACAT 193157 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCT 70907 ||| || || ||||| || ||||||| ||| ||||| ||| | ||| | | Sbjct 193156 GCCCGTCTTAAGACCAAGCTTCCATCCAGCAAAGTGCATCGACGTGATCTTGCCCATGGT 193097 Query 70908 AGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGC 70967 ||| || ||||| || |||| |||||| || ||||| ||||| || | ||| || Sbjct 193096 AGGCTCCTTCATGTGGATGTTCAACGACTGGGACTGGTCGATAAAGGCACCACGGTCGGC 193037 Query 70968 AGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAA 71026 |||||| | ||||| | || | |||||||||| ||| || |||| ||| ||| Sbjct 193036 AGCCATCTCGATGATTCTGCGCTGCGAGATTTCCCAAACAGTCTTGTAAAGCTC-CTTGG 192978 Query 71027 TATCTTCTGGAAGGTT-TGTATTC-TG-AATGGATCCACCATCTGCAATAAT 71075 | || || || | || | |||| || |||||| ||||| || || || || Sbjct 192977 TCTCATCGGGGATATTGGGAATTCGTGCAATGGAACCACCCTCGGCGATGAT 192926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671135726854640