Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq393 176 6e-39 >seq393 Length=255347 Score = 176 bits (194), Expect = 6e-39 Identities = 591/905 (65%), Gaps = 20/905 (2%) Strand=Plus/Minus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 |||||||||||| || | |||| | | | ||||| || || | || ||||||| | Sbjct 192052 TTCGAACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGT 191993 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63256 ||| || |||| || | || || ||||| || | || |||||||| ||||| || Sbjct 191992 CCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAA 191933 Query 63257 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63316 ||||| | || | | ||||| ||||| ||||| || || ||||| |||| Sbjct 191932 GAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAA-GCCAA 191874 Query 63317 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 | | ||||| ||||| || || | ||| ||||| | | || || || ||||| || | Sbjct 191873 AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCCAC 191814 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 |||| || | ||| | ||||||||| || || || | | ||| ||||| | |||||||| Sbjct 191813 CCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTG 191754 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGA 63494 || | || ||||| ||| || ||| || ||||||| || | | | | ||| Sbjct 191753 ATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGAT-TCGGTGGACGTTGAGA 191695 Query 63495 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCC 63554 || || || || || | || ||||| || ||||| || | ||||| ||||| || Sbjct 191694 CCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCG 191635 Query 63555 TCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 63612 || ||||| || || |||||| | || || ||| ||||| | ||||| | | Sbjct 191634 TCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATG--GTG 191577 Query 63613 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTG 63671 | || || || || | ||| || || ||||| ||||| | |||| || | |||| | | Sbjct 191576 TGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAG-TCG 191518 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTA 63729 || |||||||| || || || | ||| | || || || || || || ||||| | Sbjct 191517 TAAGTCTCAATGGCCTTTTCAATGT--CATCGCCGTGTATGCCGACGGCAACTCGCATGA 191460 Query 63730 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63789 |||||| || || | || | | |||| |||| | | |||||| || | Sbjct 191459 GCATGTGTTGTGGGCGCTCGGCAACCTTGCCATTTACACGGAGGAGGTAGGACCGCTCGA 191400 Query 63790 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 63849 || || || || || | | ||| |||||||| ||||| | ||| ||||||||| Sbjct 191399 GCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCTCGGTCGTATACTATAGCCGAGTTGA 191340 Query 63850 GTTTATCCTTATATTTGTTAACTATATCCATGGTGA--TACT-TGAAATAATCGGAGAAT 63906 | | || | || | | || | || || || | || || || || Sbjct 191339 GCTCCTCTGCGTGTTCCTGA---ATGACTTTGTAGACGTAGTCGGAGATCATGGGCTGCC 191283 Query 63907 GTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtt 63966 || || || || || || || |||||| | | || || || || | ||| | | Sbjct 191282 TCTTGCCGTTCTTGGGGTTGACGTAGTTGTAGAGTTCGTCTATGACGGCCGAGAATTGCT 191223 Query 63967 tttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGCATAATCCG 64026 | ||||| | |||||| |||||||| ||||| || | ||||| |||||||| || || | Sbjct 191222 TCTTTGTCTGCTTGTGGAGATTTGACACGGCGATACGCGCGGCGAGAATGGCGTAGTCGG 191163 Query 64027 GATGT 64031 ||||| Sbjct 191162 GATGT 191158 Score = 96.9 bits (106), Expect = 4e-15 Identities = 207/303 (68%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 61983 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 62042 |||| ||| | ||||||||||| || ||||| |||| | ||||| || |||||||| Sbjct 193215 TCCTGGTCGACGGTGAATTGAATAGGGGCGGAGGCGGCCATGGTACGGAGGTAGTACATG 193156 Query 62043 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 62102 ||||| || ||||| || ||||||| ||| ||||| ||| | ||| | Sbjct 193155 CCCGTCTTAAGACCAAGCTTCCATCCAGCAAAGTGCATCGACGTGATCTTGCCCATGGTA 193096 Query 62103 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62162 || || || ||||| |||| || || || ||||| ||||| || | ||| ||| Sbjct 193095 GGCTCCTTCATGTGGATGTTCAACGACTGGGACTGGTCGATAAAGGCACCACGGTCGGCA 193036 Query 62163 GCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 62221 ||||| | ||||| | || | |||||||||| ||| || |||| ||| ||| | Sbjct 193035 GCCATCTCGATGATTCTGCGCTGCGAGATTTCCCAAACAGTCTTGTAAAGCTC-CTTGGT 192977 Query 62222 ATCTTCTGGAAGGTT-TGTATTC-TG-AATGGATCCACCATCTGCCATAATCCTATTCTT 62278 || || || | || | |||| || |||||| ||||| || || || || | ||||| Sbjct 192976 CTCATCGGGGATATTGGGAATTCGTGCAATGGAACCACCCTCGGCGATGATGCGGTTCTT 192917 Query 62279 GAT 62281 || Sbjct 192916 CAT 192914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622943976248240