Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_008035.3
Length=126629
Score E
Sequences producing significant alignments: (Bits) Value
seq225 100 2e-16
>seq225
Length=197037
Score = 100 bits (110), Expect = 2e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || ||||| | || |||| ||| || || |||||||| || ||||||||||| |
Sbjct 138917 CCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAG 138858
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| |||| || | ||| || || ||| | || || || || |||||| |||
Sbjct 138857 AGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGG 138798
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| || | ||| || | | | | ||||||| || |||
Sbjct 138797 ATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTGTCGATGGTGTCGCTGGATTCCACC 138738
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936
|||| ||||||||| ||||| || || || ||||| || || ||||||
Sbjct 138737 TCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 138690
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/215 (70%), Gaps = 1/215 (0%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
|| || || || | ||| || | |||||| ||||||||||| || ||||||||||||| |
Sbjct 138461 CCACCGCGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 138402
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | ||| || || || |||| || ||||| || ||| ||
Sbjct 138401 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGA 138342
Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888
| |||||| ||||| ||| | | ||| || | | | | |||||| | ||| |
Sbjct 138341 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACT 138282
Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTT-TTGA 16922
|| | |||||||| || ||||||| ||| ||||
Sbjct 138281 TCAAGCGTGATGGTCTTGCCGGTCACTGTTGTTGA 138247
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783
|| || | |||||| ||||||||||| || |||||||||||| || || | ||||
Sbjct 138674 AGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCT 138615
Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843
|| | || || || || | || || |||||||||||| ||| | ||||| |||||
Sbjct 138614 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCC 138555
Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903
||| | ||| || | | | | ||||| | ||| ||||| ||||| ||
Sbjct 138554 TGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTC 138495
Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935
|| || ||||| || ||||| || ||||||||
Sbjct 138494 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463
Score = 82.4 bits (90), Expect = 6e-11
Identities = 142/204 (70%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768
||||| || || | || || | |||||| ||||||||||| || ||||||||||||| |
Sbjct 138178 CCTCCACGGAGGCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138119
Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828
| ||| | | ||||| | || ||||| || | || | || || ||||| ||
Sbjct 138118 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGA 138059
Query 16829 ACGCCCTCTTTGTCGGCAAT-TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887
| |||||| ||||| ||| ||||| ||| || | | | | |||||| | ||||
Sbjct 138058 ATGCCCTCCTTGTCCTGAATCTTGCT-CTTGACATTGTCGATGGTGTCGGAAGACTCCAC 138000
Query 16888 TTCCACGGTGATGGTTTTTCCGGT 16911
|| | |||||| || || |||||
Sbjct 137999 CTCAAGGGTGATCGTCTTGCCGGT 137976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405085956077860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |