Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq393 174 2e-38
>seq393
Length=255347
Score = 174 bits (192), Expect = 2e-38
Identities = 589/903 (65%), Gaps = 16/903 (2%)
Strand=Plus/Minus
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051
|||||||||||| || | |||| | | || ||||| || || | || ||||||| |
Sbjct 192052 TTCGAACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGT 191993
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63111
||| || |||| || | || || ||||| || | || |||||||| ||||| ||
Sbjct 191992 CCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAA 191933
Query 63112 TAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63171
||||| | || | | ||||| ||||| ||||| || || ||||| ||||
Sbjct 191932 GAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAA-GCCAA 191874
Query 63172 A-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230
| | ||||| ||||| || || | ||| ||||| | | || || || ||||| || |
Sbjct 191873 AGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCCAC 191814
Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290
|||| || | ||| | ||||||||| || || || | | ||| ||||| | ||| || |
Sbjct 191813 CCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTG 191754
Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT-AGA 63349
|||| || ||||| || || ||| || ||||||| || | | | | |||
Sbjct 191753 ATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGAT-TCGGTGGACGTTGAGA 191695
Query 63350 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 63409
|| || || || || | || ||||| || ||||| || | || || ||||||||
Sbjct 191694 CCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCG 191635
Query 63410 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT--GGTGACGACTAG 63467
|| || || || ||| |||||| | || || ||| ||||| | ||||| | |
Sbjct 191634 TCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATG--GTG 191577
Query 63468 TTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGA-AAGTAGATTG 63526
| || || || || | ||| || || ||||| ||||| | |||| || | |||| | |
Sbjct 191576 TGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAG-TCG 191518
Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTG--ATGAATTCCTACTGCGACACGCATTA 63584
|| |||||||| || || || | ||| | || || || || || || ||||| |
Sbjct 191517 TAAGTCTCAATGGCCTTTTCAATGT--CATCGCCGTGTATGCCGACGGCAACTCGCATGA 191460
Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644
|||||| || || | || | | |||| |||| | | |||||| || |
Sbjct 191459 GCATGTGTTGTGGGCGCTCGGCAACCTTGCCATTTACACGGAGGAGGTAGGACCGCTCGA 191400
Query 63645 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGA 63704
|| || || || || | | ||| |||||||| ||||| | ||| |||||||||
Sbjct 191399 GCGTCTTGAAGCCGAAGAACTGGTAGTTGAAGTCTCGGTCGTATACTATAGCCGAGTTGA 191340
Query 63705 GTTTATCCTTATATTTGTTAACTACATCCATGGTAATACT-TGAAATAATAGGAAAATGT 63763
| | || | || | || || | | | || | || || || ||
Sbjct 191339 GCTCCTCTGCGTGTTCCTGAATGAC-TTTGTAGACGTAGTCGGAGATCATGGGCTGCCTC 191281
Query 63764 TTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTCACTAAATAGtttt 63823
|| || || || || ||||| |||||| | | || || || || | ||| | ||
Sbjct 191280 TTGCCGTTCTTGGGGTTGACGTAGTTGTAGAGTTCGTCTATGACGGCCGAGAATTGCTTC 191221
Query 63824 tttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGCATAATCCGGA 63883
||||| | ||||| |||||||| ||||| || | ||||| |||||||| || || |||
Sbjct 191220 TTTGTCTGCTTGTGGAGATTTGACACGGCGATACGCGCGGCGAGAATGGCGTAGTCGGGA 191161
Query 63884 TGT 63886
|||
Sbjct 191160 TGT 191158
Score = 91.5 bits (100), Expect = 2e-13
Identities = 206/303 (68%), Gaps = 5/303 (2%)
Strand=Plus/Minus
Query 61838 TCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATT 61897
|||| ||| | ||||||||||| || ||||| |||| | ||||| || ||||||||
Sbjct 193215 TCCTGGTCGACGGTGAATTGAATAGGGGCGGAGGCGGCCATGGTACGGAGGTAGTACATG 193156
Query 61898 CCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTC 61957
||||| || ||||| || ||||||| ||| ||||| ||| | ||| |
Sbjct 193155 CCCGTCTTAAGACCAAGCTTCCATCCAGCAAAGTGCATCGACGTGATCTTGCCCATGGTA 193096
Query 61958 GGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCA 62017
|| || || ||||| |||| || || || ||||| ||||| || | ||| |||
Sbjct 193095 GGCTCCTTCATGTGGATGTTCAACGACTGGGACTGGTCGATAAAGGCACCACGGTCGGCA 193036
Query 62018 GCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA-CTCGCTTAAT 62076
||||| | || || | || | |||||||||| ||| || |||| ||| ||| |
Sbjct 193035 GCCATCTCGATGATTCTGCGCTGCGAGATTTCCCAAACAGTCTTGTAAAGCTC-CTTGGT 192977
Query 62077 ATCTTCTGGAAGGTT-TGTATTC-TG-AATGGATCCACCATCTGCCATAATCCTATTCTT 62133
|| || || | || | |||| || |||||| ||||| || || || || | |||||
Sbjct 192976 CTCATCGGGGATATTGGGAATTCGTGCAATGGAACCACCCTCGGCGATGATGCGGTTCTT 192917
Query 62134 GAT 62136
||
Sbjct 192916 CAT 192914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633628720954400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |