Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq225 185 2e-41
seq403 125 1e-23
>seq225
Length=197037
Score = 185 bits (204), Expect = 2e-41
Identities = 184/236 (78%), Gaps = 2/236 (1%)
Strand=Plus/Minus
Query 68228 TTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATA 68287
||| | ||| || || || || | ||||| || || || ||||| || |||||||| ||
Sbjct 138924 TTACTGTCCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTA 138865
Query 68288 ATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTC 68347
|| ||||| |||| || ||||| | ||||| || || || ||||| | ||| |||||
Sbjct 138864 GTCTGAGAGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTC 138805
Query 68348 GGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG- 68406
|| || ||||| ||||||||||| ||||| | ||| ||| ||||||||||| ||||
Sbjct 138804 CGGAGGGATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTGTCGATGGTGTC-GCTGG 138746
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||| || |||||||||||||| ||||| ||||| ||||||||||| || ||||||
Sbjct 138745 ATTCCACCTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 138690
Score = 156 bits (172), Expect = 8e-33
Identities = 172/229 (75%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292
|||| || || || || | || | || || |||||||| || |||||||| || |||
Sbjct 138691 TTCCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 138632
Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352
|| || | || ||||| | |||||| || ||||| ||||| | |||||||| || |
Sbjct 138631 TCAGAGTACGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAG 138572
Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412
| || || |||||||| |||||||| | |||||| || || ||||||| || || |
Sbjct 138571 GGATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAA 138512
Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
||||||| ||||| || || || || |||||||||||||| ||||||||
Sbjct 138511 CTTCCAACGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463
Score = 136 bits (150), Expect = 7e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || ||||| | || | || || |||||||| || |||||||| || |||||
Sbjct 138178 CCTCCACGGAGGCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138119
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| |||||||| || | | ||| ||||| || |||
Sbjct 138118 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGA 138059
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| |||||| ||||||||||| | || || ||
Sbjct 138058 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 137999
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGA 68439
|| | |||||| || || || ||||
Sbjct 137998 TCAAGGGTGATCGTCTTGCCGGTGA 137974
Score = 136 bits (150), Expect = 7e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||||| || | || || |||||||| || || ||||| || |||||
Sbjct 138461 CCACCGCGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 138402
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | ||||| |||||||| || || | || || || || |||
Sbjct 138401 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGA 138342
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||||||||| | ||||||| || |||||||| | || || |||
Sbjct 138341 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACT 138282
Query 68415 TCCAAGGTGATGGTTTTTCCCGT 68437
|| | |||||||| || || ||
Sbjct 138281 TCAAGCGTGATGGTCTTGCCGGT 138259
>seq403
Length=285126
Score = 125 bits (138), Expect = 1e-23
Identities = 294/440 (67%), Gaps = 8/440 (2%)
Strand=Plus/Plus
Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994
|||||| || ||||| ||||| || || || |||||||||||||| |||||| |
Sbjct 107386 CATGACACCGGCCTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGC 107445
Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054
|| || ||| |||||||||||| |||||||| |||| | | |||||||| ||
Sbjct 107446 AAGCGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGGGGTTGCC 107505
Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114
||| || || | ||||| || |||||||| |||||||||| ||| || | |||
Sbjct 107506 GAGAGCAAGGAGCAGACGGTCGGCGACGAACTCAATGTACTGGCACATGAGAGTGGCGTT 107565
Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174
|||||| | | ||| || | ||||||| | ||| |||| || | |||| ||
Sbjct 107566 CATGCCGAGAAGAGCGCAAGGAAGCGCGTCGCTGAGGAACTCCTGCTCAATCTCGACAGC 107625
Query 10175 TTCCTCGACGAT--GCTCTTTACCA--CGTCAAGGGACAGCTTGTTCTCGAGCTTCGAAT 10230
||| || ||| ||| | || | | ||| | | ||||| ||| ||
Sbjct 107626 TTCGGTGATGATAGCCTCGACAGCAGCCTTGCTGGGGC-GGTTGTT---GAGGAGAGAGA 107681
Query 10231 ACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACA 10290
| || || |||| | ||| | |||||||| || ||||| ||||||||| |
Sbjct 107682 AGAGCAGGCAGGCAAAGTCGGTGTGCATACCCTCGTCACGAGAGATGAGCTCGTTGGAGA 107741
Query 10291 AACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGG 10350
| |||||||||||||| || || || || |||||| |||| | ||| || |||
Sbjct 107742 AGGTAAGACCGGGCATGAGACCACGCTTCTTCAACCAGAAGATGGAGGCGAATGAACCGC 107801
Query 10351 AGAACAGAAGACCCTCCACG 10370
||| | | |||||| |||
Sbjct 107802 TGAAGAAGATACCCTCAACG 107821
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921617630604080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |