Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq225 89.7 5e-13 seq385 82.4 8e-11 >seq225 Length=197037 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || ||||| | || || || || ||||||||||| || | Sbjct 138462 ACCACCGCGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 138403 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| | || || || ||||| ||||| |||| || |||||||| || || || Sbjct 138402 CAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGG 138343 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || ||| || || | || || | || || Sbjct 138342 AATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGAC 138283 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTT 64429 ||| | || | |||||||||||||| ||| || Sbjct 138282 TTCAAGCGTGATGGTCTTGCCGGTCACTGTTGTT 138249 >seq385 Length=1101030 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| || | | |||||| |||| || || ||||||||| Sbjct 327371 GTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGTTGCTTGCCG 327430 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGT 64354 || | ||||| ||||||||||| || ||||| || || || ||| || Sbjct 327431 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTGGT 327478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499642214338160