Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq393 226 3e-54 seq225 129 6e-25 seq403 127 2e-24 >seq393 Length=255347 Score = 226 bits (250), Expect = 3e-54 Identities = 722/1103 (65%), Gaps = 55/1103 (5%) Strand=Plus/Minus Query 153383 CTCGTACGGCATGCGCAGCAGCACAAAGGCGTCGGCCAGACCCTGGATACCGACGCCGAT 153442 |||| | |||| |||||| | || || |||||||||||||| | ||| | || || Sbjct 192511 CTCGAAGGGCAGGCGCAGGGCGAGGAAAGCATCGGCCAGACCCTGTACACCCATACCAAT 192452 Query 153443 GGGTCGATGCTTCTCGTTGCTGCGCCTCGCGCTCGCTATGGGATAGTGATTGCGATCGAT 153502 ||||| || ||||||||| | ||| | | | ||| ||||| ||| || || Sbjct 192451 AGGTCGGTGGCGGAAGTTGCTGCGGCGCGCCTCCTCAACGGGGTAGTGGTTGACCTCAAT 192392 Query 153503 AATTTTGTTGAGGTTGCGCACCACCACTTTAGTTATCGCCTTAAGTTTCTCGAAATCATA 153562 ||| ||||| | |||||| || |||| || | | | | || || | || ||| | Sbjct 192391 AATCTTGTTCAAGTTGCGGGTGACGACTTGGGTAACCTCGTGCAGCTTTTGAAAGTCAAA 192332 Query 153563 GGTCATTTCGTCGACGC--GTACGCATCGATTCACGGCA-----ATAGACGCCAGATTAC 153615 ||| || ||| ||| | | | | | |||| | || ||||| || | Sbjct 192331 C------TCGCCG-CGCTTGTAGTCGACAAATGAAGGCAGAGCGAGCGAAGCCAGGTTGC 192279 Query 153616 AGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATCTCGGCGCAGAGGTTGCTGCATT 153675 |||| || ||| || | | |||||| || ||||||| |||||||||| || Sbjct 192278 AGACAGCGACCTCATCAGGAGCAGTGTACTCGACAATCTCGGTGCAGAGGTTGGAGCTGC 192219 Query 153676 TTATGACGCCCAAATTTTGCTGATTGCTTTTGCGATTGCACGCGTCTTTGAAGAGCATGT 153735 ||| ||||| || | ||| ||||| ||||| ||||| || || ||| ||||||| Sbjct 192218 GAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTAGAGCATAA 192159 Query 153736 ACGGTCCGCCGGTCTCGACTTGCGTTTCGACGATAAACCTATG-CAGGTCCTGCGCTCGC 153794 | || || ||||| || | || | |||| | || ||| | ||| || || Sbjct 192158 AGGGGTTACCAGTCTCAGTCTGAGCCTCAAGGATAG-CATACCACAGCTTCTGGGCGCGA 192100 Query 153795 ACCCGCTGCCGATAGCGGCCCTCGCT------CTCGTATCGCTCGTACAGTCGCT-CAAA 153847 ||| || |||||||| | | |||||| | ||||||||| |||| | || Sbjct 192099 ACCGTCTC------GCGGCCCTTGTTTTGCTTCTCGTAGCTCTCGTACAG-CGCTTCGAA 192047 Query 153848 CTCGTCGCCGTAGCAGTCGGCGAGGCCGGGACACTGATGCGGACACATCAGCGACCACAT 153907 ||||||||||||| ||||| || || || |||| | || |||||||| | ||| Sbjct 192046 CTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGTCCA--- 191990 Query 153908 ATCGTCGG---CGTTGACGCGTCGCATGAACAGATCCGGCACCCAGAGCGCGTACATGAG 153964 |||| || | | ||| || |||||||| || || | ||| || ||||| | ||| Sbjct 191989 ATCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAAGAG 191930 Query 153965 GTCGCGCGCCTTGCAATCCTCCGCGC--CCATG----TTGCGTTTCAGATTGAGCACGCT 154018 ||||| || || | ||||| | || || ||||| ||| | || | || Sbjct 191929 ATCGCGGGC---GCGAACCTCCTCCTTTCCGTGGTTCTTGCG---CAGGTCCAGGAAGCC 191876 Query 154019 ATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CC 154075 | ||| || |||||||| || |||| ||||| ||| | ||||||| ||||| || Sbjct 191875 AAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCC 191816 Query 154076 GCCCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCT 154135 ||||| ||||||| ||| | | |||||| | || || | |||||| || ||| | Sbjct 191815 ACCCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTT 191756 Query 154136 TGCGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAAC 154195 || || |||||||| || | | |||| ||| || | | | || ||||| | Sbjct 191755 TGATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGATTCGGTGGACGTTGAG 191696 Query 154196 GCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCA-GTCGCCCAGCGTCCTGTAGATGC 154254 ||||| ||||| || ||| || || |||||| ||| || || |||||||| Sbjct 191695 ACCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTG-AGTGTGTCGTAGATGC 191637 Query 154255 CGTCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGA-ATGCGC 154313 |||||||||| || || | | ||| | ||| || || |||| || || ||| | Sbjct 191636 CGTCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATG-GT 191578 Query 154314 GTTCCCGCCGAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 || || || || ||||| || ||||| ||||| ||||| ||| | | Sbjct 191577 GTGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAGTCG 191518 Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 || || || ||||| | ||| || ||||||||||| ||||||| || || ||||||||| Sbjct 191517 TAAGTCTCAATGGCCTTTTCAATGTCATCGCCGTGTATGCCGACGGCAACTCGCATGAGC 191458 Query 154434 ATGTGCTGCGGACGTTCGGCGAC 154456 ||||| || || || ||||| || Sbjct 191457 ATGTGTTGTGGGCGCTCGGCAAC 191435 >seq225 Length=197037 Score = 129 bits (142), Expect = 6e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || | ||| | | | |||||||| || ||||||||||||||| Sbjct 138689 CCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 138630 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | |||||| ||| ||||| || ||||| | |||| |||||||||||||||||||| Sbjct 138629 AGAGTACGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGG 138570 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 ||||| || ||||| ||| | || | || |||| || | ||||| | ||||| | Sbjct 138569 ATACCCTCCTTGTC-CTGAATCTTGGACTTGACATTG-TCAATCGTGTCTGAAGACTCAA 138512 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | ||| | || || |||||||| || || || || |||||||| Sbjct 138511 CTTCCAACGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || ||||| | | |||||||| || ||||||||||| Sbjct 138917 CCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAG 138858 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||| || ||||| ||||| | | |||| ||||| || ||||||||||| Sbjct 138857 AGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGG 138798 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || |||| | || | ||||||| | || |||||| Sbjct 138797 ATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTGTCGATGGTGTCGCTGGATTCCACC 138738 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | || || || || ||||| || || || || ||||| Sbjct 138737 TCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 138691 Score = 89.7 bits (98), Expect = 5e-13 Identities = 151/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || |||| |||| || | ||| | | | |||||||| ||||||||||||||| | Sbjct 138461 CCACCGCGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 138402 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||||| || |||| | || || ||||| || ||||| || Sbjct 138401 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGA 138342 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| | || | || | ||| || | |||||||| |||||| | Sbjct 138341 ATGCCCTCCTTGTC-TTGAATCTTCGACTTGACGTTG-TCAATGGTGTCGGACGACTCGA 138284 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| | || || || |||| ||| || Sbjct 138283 CTTCAAGCGTGATGGTCTTGCCGGTCACTGTTGTT 138249 >seq403 Length=285126 Score = 127 bits (140), Expect = 2e-24 Identities = 251/366 (69%), Gaps = 23/366 (6%) Strand=Plus/Minus Query 52482 ATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGAAGGACTGCACACGGAC 52541 |||||||| || || ||| ||||||| | || || || ||||| || ||||||| ||| Sbjct 107757 ATGCCCGGTCTTACCTTCTCCAACGAGCTCATCTCTCGTGACGAGGGTATGCACACCGAC 107698 Query 52542 TTTGCGTGCCT---CTACTA------CAAGACGCGCGTGACCGAAAAATTGGATTCGGAC 52592 ||||| ||||| || || ||| | ||| || | || || | | | | Sbjct 107697 TTTGCCTGCCTGCTCTTCTCTCTCCTCAACAACCGC----CCCAGCAA--GGCTGCTGTC 107644 Query 52593 ACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCG 52652 || || || ||| || || || | || || ||||||| | | | |||| Sbjct 107643 --GAGGCT----ATCATCACCGAAGCTGTCGAGATTGAGCAGGAGTTCCTCAGCGACGCG 107590 Query 52653 CTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTC-CATGTGCGAGTACATCGAGTTTGT 52711 || || || || || ||||||||||| || || ||||||| ||||||| ||||| || Sbjct 107589 CTTCCTTGCGCTCTTCTCGGCATGAACGC-CACTCTCATGTGCCAGTACATTGAGTTCGT 107531 Query 52712 GGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTT 52771 || || |||||| | | ||||| | || ||||||| |||||| ||| || || Sbjct 107530 CGCCGACCGTCTGCTCCTTGCTCTCGGCAACCCCAAGTACTACAACGCCACCAACCCCTT 107471 Query 52772 TGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGG 52831 || || ||| | ||||| ||||||| |||||||||||||| ||||||||||| || || Sbjct 107470 CGACTTCATGGAGAACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGG 107411 Query 52832 CGAGTA 52837 || || Sbjct 107410 TGACTA 107405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496259831842080