Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq225 109 5e-19 seq403 102 8e-17 seq393 102 8e-17 >seq225 Length=197037 Score = 109 bits (120), Expect = 5e-19 Identities = 154/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | |||| || | ||| | || ||||| || ||||| ||||| ||| | Sbjct 138461 CCACCGCGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 138402 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || || || ||||| ||| | |||| ||||||||||| || || Sbjct 138401 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGA 138342 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| || ||| ||||| |||| || | |||||| | |||||| Sbjct 138341 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTG-TCAATGGTGTCGGACGACTCGAC 138283 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099 ||| | || | || |||||||||| ||| || Sbjct 138282 TTCAAGCGTGATGGTCTTGCCGGTCACTGTTGTT 138249 Score = 96.9 bits (106), Expect = 3e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| || ||||| ||| || ||||| || || Sbjct 138148 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 138089 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| || ||||| || || || ||||||||||||||| || || |||| Sbjct 138088 GCGAAGATCAAGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG 138029 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089 | | |||| |||||| | | ||| || || | ||| | ||| |||||||| Sbjct 138028 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGT 137976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | || | ||| | || ||||| || || || ||||| |||| Sbjct 138690 TCCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 138631 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 || || || || || ||||| || |||||| |||| | ||||| || || ||||| Sbjct 138630 CAGAGTACGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGG 138571 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| || || ||||| | || | ||||| | | ||| || Sbjct 138570 GATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAAC 138511 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || ||||| ||||| || || || || |||||||| Sbjct 138510 TTCCAACGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/235 (69%), Gaps = 3/235 (1%) Strand=Plus/Minus Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939 ||||| |||||| |||| || | ||||||||| | |||||||| || || || ||||| Sbjct 138923 TACTG-TCCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTA 138865 Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999 || | || || || || || || || ||||| |||| | || ||||| || Sbjct 138864 GTCTGAGAGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTC 138805 Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058 ||||| |||||||||||||| ||| || ||| | |||| |||| |||||| | Sbjct 138804 CGGAGGGATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTG-TCGATGGTGTCGCTGG 138746 Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || | ||| | || || || || ||||| || || || || ||||| Sbjct 138745 ATTCCACCTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 138691 >seq403 Length=285126 Score = 102 bits (112), Expect = 8e-17 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412 ||||||| |||| |||||| |||||| || ||| || || || || | | | Sbjct 107630 CCGAAGCTGTCGAGATTGAGCAGGAGTTCCTCAGCGACGCGCTTCCTTGCGCTCTTCTCG 107571 Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472 | |||||||| | ||| | ||||||| || || ||||||||||| |||||| || Sbjct 107570 GCATGAACGCCACTCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTGCTCCTTG 107511 Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532 || | |||||| ||| || || || || ||||| || ||| | ||||| | Sbjct 107510 CTCTCGGCAACCCCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCT 107451 Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578 |||| | |||||||||||||| ||||||||||| || || || || Sbjct 107450 CGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 107405 >seq393 Length=255347 Score = 102 bits (112), Expect = 8e-17 Identities = 953/1503 (63%), Gaps = 72/1503 (5%) Strand=Plus/Minus Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093 || ||| || ||| |||||| || | ||||||||||||| ||||| || ||||| || Sbjct 192895 CATGTCGACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAACTCACCAGCGAGCAC 192836 Query 146094 GCGCCTCAGA-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCT 146152 || | ||| || | |||| ||| | |||||||| |||||||||| ||||| |||| Sbjct 192835 ACGGC-GAGAGTAAATGTTGGAAGTGTATGGCTCGAAGCACTCGTTGTTTCCGAGAATCT 192777 Query 146153 GCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTT 146212 ||| || | || || |||||| || | |||| ||||| | || ||||| || Sbjct 192776 GCGAGGTGGAGGCAGTTGGCATGGGTGCGATGAGCAGCGAGTTGCGGACACCGTG-CTGG 192718 Query 146213 G-AATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGT-- 146269 | |||||| || || | ||| | ||| | |||| || || | | || | Sbjct 192717 GCAATCTTGGCCTTGAGCTCATCCCAGTCCCAGA---GATCGGTAGG---GGTCTTCTCC 192664 Query 146270 -AGTTGTCGTAATGCATAGTG-CCGCGGA-ACAGGGGGCTAT-TCTCGTACGATTCATAA 146325 | ||||||| || | | || || ||| ||||| | || |||||| | || ||| Sbjct 192663 CACATGTCGTACTGGAGAATGCCCTTGGAGACAGGAG---ATCCCTCGTAGGTCTCGTAA 192607 Query 146326 GGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCC 146385 ||||| |||||| | |||||| | |||||| | ||| |||||||| Sbjct 192606 GGACCAAGTTCCTTGGCAATATCGCAGGACGAAGTCAGAGCGGCGTGGTAGATGGTCTCG 192547 Query 146386 GCGATCATGTA-GTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCAC 146444 |||| || | ||||| || |||||| | | ||| |||| | || | Sbjct 192546 AAGATC-TGAATGTTGAGCTTCTTGGCCTGGTTGGACTCGAAGGGCAGGCGCAGGGCGAG 192488 Query 146445 AAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT 146504 || || ||||| |||||||||| || | ||||| || ||||| ||| ||| Sbjct 192487 GAAAGCATCGGCCAGACCCTGTACACCCATACCAATAGGTCGGTGGCGGAAGTTGCTG-- 192430 Query 146505 CGCAGCGC--CCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACG 146562 || |||| || || ||| ||||||||| || || |||||||| | || || | Sbjct 192429 CGGCGCGCCTCCTCAACGGGGTAGTGGTTGACCTCAATAATCTTGTTCAAGTTGCGGGTG 192370 Query 146563 ACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAA-TGTTTTAGTTTTAACGTTGAC 146621 || | || || | | |||| | ||||||| | | || | || || Sbjct 192369 ACGACTTGGGTAACCTCGTGCAGCTTTTGAAAGTCAAACTCGCCGCGCTTGTA-GTCGA- 192312 Query 146622 GCACTTGTTG--ACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCA- 146678 || || | | |||| || |||| ||| || || || ||| || | ||| Sbjct 192311 -CAAATGAAGGCAGAGCGAGCGAAGCCAGGTTGCAGACAGCGACCTCATC--AGGAGCAG 192255 Query 146679 -ATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGT 146737 |||| |||||||||| |||||||||| || ||| |||||| || || |||| Sbjct 192254 TGTACTCGACAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGT 192195 Query 146738 TACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACAT 146794 | || ||| |||||| | |||||||||||||| | || || || || | Sbjct 192194 TGCT---CTTGCGGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCAGTCT 192138 Query 146795 TGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACAGT-TT 146852 | ||| | ||| | | | || | | ||||| | | |||| || | | || Sbjct 192137 GAGCCTCAAGGAT--AGCATACCACAGCTTCTGGGCGCGAACCGTCTCGCGGCCCTTGTT 192080 Query 146853 ATTCTTTTCGTATTTCTCGTACAATATTTCAAAACTAG-AACCGTACTCGTCGAGGAGGC 146911 | ||| ||||| ||||||||| ||| |||| | ||||| | ||| || | Sbjct 192079 TTGCTTCTCGTAGCTCTCGTACAGCGCTTC-GAACTCGTCGCCGTAGACATCGGCAAGAC 192021 Query 146912 CGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAA 146971 | || ||| ||||| || | ||| | ||| || ||||| | || || | ||| | Sbjct 192020 CAGGGCACTCGTTGGGGCACATCAGGGTCCAATCGCCGTTCTCTTGGACACGCTTCATGA 191961 Query 146972 ACAAATCGGGAATCCAAAG-GCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCC 147030 |||| ||||||||||| || || || | | ||||| || | ||||| || Sbjct 191960 ACAAGTCGGGAATCCACAGAGCGTAG-AAGAGATCGCGGGCGCGAACCTCCTCCTTTCCG 191902 Query 147031 ATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCG 147090 ||| | || || |||| | | | || | ||||| ||||| | ||| | Sbjct 191901 TGGTTCTTGCGCAGGTCCAGGAAGCCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 191842 Query 147091 GCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAG 147147 || | || ||| ||| || || ||||| ||||||| ||| | |||| ||| | Sbjct 191841 GCAAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGTAT 191782 Query 147148 ACTCGTAACATGGACACGAGGCCGCCGGATTTT---GTGGTGCCG---TTGTATTGAG-C 147200 || || | ||||| | ||| ||| ||| || |||||||| |||| ||| | Sbjct 191781 ACACGGAGCATGGGAATGAGACCGTTTGATGTTCCGTTGGTGCCGCCAATGTA-GGAGCC 191723 Query 147201 GCTG--ACG----CTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGC 147254 | || ||| | || ||| | || || | ||| || | || || |||||||| Sbjct 191722 GGTGGCACGGATTCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAAGC 191663 Query 147255 G-GACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGG 147312 | | || || | || | ||||||||||||||||||||||||||| ||| | || ||| Sbjct 191662 GCAAGTCTTG-AGTGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCATGTCGATG-AGG 191605 Query 147313 AAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGC 147372 || || || |||| ||||| ||||| || ||||| || || |||||| Sbjct 191604 AAGCAGGAGGACATCTGGGGTGATGGTGTGCCTGCGTTGAACAGGGTTGGCGAGGCGTGT 191545 Query 147373 GTGAACGTGC-CCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCC 147431 || || || | | ||| | | || || |||||||| | || ||||||||| Sbjct 191544 GT-AAAGTACTTTTGCGACATGTAGTCGTAAGTCTCAATGGCCTTTTCAATGTCATCGCC 191486 Query 147432 GTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATT 147491 ||| ||| | | ||| || |||||||||||||| || || || || |||| | | |||| Sbjct 191485 GTGTATGCCGACGGCAACTCGCATGAGCATGTGTTGTGGGCGCTCGGCAACCTTGCCATT 191426 Query 147492 GAC 147494 || Sbjct 191425 TAC 191423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475498339283360