Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq225 109 5e-19
seq403 102 8e-17
seq393 102 8e-17
>seq225
Length=197037
Score = 109 bits (120), Expect = 5e-19
Identities = 154/214 (72%), Gaps = 2/214 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|||||||| | |||| || | ||| | || ||||| || ||||| ||||| ||| |
Sbjct 138461 CCACCGCGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 138402
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| ||||| ||| || || || ||||| ||| | |||| ||||||||||| || ||
Sbjct 138401 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGA 138342
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|||||||||||||| || ||| ||||| |||| || | |||||| | ||||||
Sbjct 138341 ATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTG-TCAATGGTGTCGGACGACTCGAC 138283
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 127099
||| | || | || |||||||||| ||| ||
Sbjct 138282 TTCAAGCGTGATGGTCTTGCCGGTCACTGTTGTT 138249
Score = 96.9 bits (106), Expect = 3e-15
Identities = 125/173 (72%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976
|| ||||| || || || ||||| ||| || ||||| ||| || ||||| || ||
Sbjct 138148 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCAAGCTGCTTGCCG 138089
Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036
||| ||||||| || ||||| || || || ||||||||||||||| || || ||||
Sbjct 138088 GCGAAGATCAAGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG 138029
Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGT 127089
| | |||| |||||| | | ||| || || | ||| | ||| ||||||||
Sbjct 138028 ACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTGCCGGT 137976
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945
|||||| || | || | || | ||| | || ||||| || || || ||||| ||||
Sbjct 138690 TCCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCT 138631
Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005
|| || || || || ||||| || |||||| |||| | ||||| || || |||||
Sbjct 138630 CAGAGTACGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGG 138571
Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| || || ||||| | || | ||||| | | ||| ||
Sbjct 138570 GATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAAC 138511
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
||| | || | || ||||| ||||| || || || || ||||||||
Sbjct 138510 TTCCAACGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463
Score = 89.7 bits (98), Expect = 5e-13
Identities = 163/235 (69%), Gaps = 3/235 (1%)
Strand=Plus/Minus
Query 126880 TACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTA 126939
||||| |||||| |||| || | ||||||||| | |||||||| || || || |||||
Sbjct 138923 TACTG-TCCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTA 138865
Query 126940 ATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATC 126999
|| | || || || || || || || ||||| |||| | || ||||| ||
Sbjct 138864 GTCTGAGAGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTC 138805
Query 127000 GGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTAC 127058
||||| |||||||||||||| ||| || ||| | |||| |||| |||||| |
Sbjct 138804 CGGAGGGATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTG-TCGATGGTGTCGCTGG 138746
Query 127059 TCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|| || || | ||| | || || || || ||||| || || || || |||||
Sbjct 138745 ATTCCACCTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 138691
>seq403
Length=285126
Score = 102 bits (112), Expect = 8e-17
Identities = 158/226 (70%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 47353 CCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGG 47412
||||||| |||| |||||| |||||| || ||| || || || || | | |
Sbjct 107630 CCGAAGCTGTCGAGATTGAGCAGGAGTTCCTCAGCGACGCGCTTCCTTGCGCTCTTCTCG 107571
Query 47413 GAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTC 47472
| |||||||| | ||| | ||||||| || || ||||||||||| |||||| ||
Sbjct 107570 GCATGAACGCCACTCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTGCTCCTTG 107511
Query 47473 AGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGTTTATGAACAACATTT 47532
|| | |||||| ||| || || || || ||||| || ||| | ||||| |
Sbjct 107510 CTCTCGGCAACCCCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAGAACATCT 107451
Query 47533 CGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAATA 47578
|||| | |||||||||||||| ||||||||||| || || || ||
Sbjct 107450 CGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 107405
>seq393
Length=255347
Score = 102 bits (112), Expect = 8e-17
Identities = 953/1503 (63%), Gaps = 72/1503 (5%)
Strand=Plus/Minus
Query 146034 CAAGTCTACGAGGGCCTTGATGAGATACTGGTTGACCACCTGAAACTCGCCGGCGAGAAC 146093
|| ||| || ||| |||||| || | ||||||||||||| ||||| || ||||| ||
Sbjct 192895 CATGTCGACAAGGTCCTTGAGCAGCCATGGGTTGACCACCTGGAACTCACCAGCGAGCAC 192836
Query 146094 GCGCCTCAGA-TACACGTTGCTGGTGAACGGCTCGAACGACTCGTTGTTACCGAGTATCT 146152
|| | ||| || | |||| ||| | |||||||| |||||||||| ||||| ||||
Sbjct 192835 ACGGC-GAGAGTAAATGTTGGAAGTGTATGGCTCGAAGCACTCGTTGTTTCCGAGAATCT 192777
Query 146153 GCGCCGTCGTAGCGGTAGGCATGTACGCCACCAGCAAAGAGTTTCTCACGCCGTGTCTTT 146212
||| || | || || |||||| || | |||| ||||| | || ||||| ||
Sbjct 192776 GCGAGGTGGAGGCAGTTGGCATGGGTGCGATGAGCAGCGAGTTGCGGACACCGTG-CTGG 192718
Query 146213 G-AATCTTTTCCCGTAGTTTGGACCAATTCCACAAATGATCCGTGGGATAGATATTGT-- 146269
| |||||| || || | ||| | ||| | |||| || || | | || |
Sbjct 192717 GCAATCTTGGCCTTGAGCTCATCCCAGTCCCAGA---GATCGGTAGG---GGTCTTCTCC 192664
Query 146270 -AGTTGTCGTAATGCATAGTG-CCGCGGA-ACAGGGGGCTAT-TCTCGTACGATTCATAA 146325
| ||||||| || | | || || ||| ||||| | || |||||| | || |||
Sbjct 192663 CACATGTCGTACTGGAGAATGCCCTTGGAGACAGGAG---ATCCCTCGTAGGTCTCGTAA 192607
Query 146326 GGACCGTCGATCTTGGCCAGTTCGCAGCTAGCTTCCAGAGCCGAAAAGTATATGGTCTCC 146385
||||| |||||| | |||||| | |||||| | ||| ||||||||
Sbjct 192606 GGACCAAGTTCCTTGGCAATATCGCAGGACGAAGTCAGAGCGGCGTGGTAGATGGTCTCG 192547
Query 146386 GCGATCATGTA-GTTGACGCTCCTGGCCTCCTCGCTGTCGTAGGGGATATCGAGAAGCAC 146444
|||| || | ||||| || |||||| | | ||| |||| | || |
Sbjct 192546 AAGATC-TGAATGTTGAGCTTCTTGGCCTGGTTGGACTCGAAGGGCAGGCGCAGGGCGAG 192488
Query 146445 AAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT 146504
|| || ||||| |||||||||| || | ||||| || ||||| ||| |||
Sbjct 192487 GAAAGCATCGGCCAGACCCTGTACACCCATACCAATAGGTCGGTGGCGGAAGTTGCTG-- 192430
Query 146505 CGCAGCGC--CCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACG 146562
|| |||| || || ||| ||||||||| || || |||||||| | || || |
Sbjct 192429 CGGCGCGCCTCCTCAACGGGGTAGTGGTTGACCTCAATAATCTTGTTCAAGTTGCGGGTG 192370
Query 146563 ACAATTTTCGTCAAACGATTCAGCAGGACATAGTCAAA-TGTTTTAGTTTTAACGTTGAC 146621
|| | || || | | |||| | ||||||| | | || | || ||
Sbjct 192369 ACGACTTGGGTAACCTCGTGCAGCTTTTGAAAGTCAAACTCGCCGCGCTTGTA-GTCGA- 192312
Query 146622 GCACTTGTTG--ACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTCCTTGTCGCA- 146678
|| || | | |||| || |||| ||| || || || ||| || | |||
Sbjct 192311 -CAAATGAAGGCAGAGCGAGCGAAGCCAGGTTGCAGACAGCGACCTCATC--AGGAGCAG 192255
Query 146679 -ATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtttttttGGT 146737
|||| |||||||||| |||||||||| || ||| |||||| || || ||||
Sbjct 192254 TGTACTCGACAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGT 192195
Query 146738 TACTAAACTT---GTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTCGACAT 146794
| || ||| |||||| | |||||||||||||| | || || || || |
Sbjct 192194 TGCT---CTTGCGGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCAGTCT 192138
Query 146795 TGGTCTCGACGATGAATCTAAACAAATC-TCTGGCCTTTACTTGTCTTTCGTACAGT-TT 146852
| ||| | ||| | | | || | | ||||| | | |||| || | | ||
Sbjct 192137 GAGCCTCAAGGAT--AGCATACCACAGCTTCTGGGCGCGAACCGTCTCGCGGCCCTTGTT 192080
Query 146853 ATTCTTTTCGTATTTCTCGTACAATATTTCAAAACTAG-AACCGTACTCGTCGAGGAGGC 146911
| ||| ||||| ||||||||| ||| |||| | ||||| | ||| || |
Sbjct 192079 TTGCTTCTCGTAGCTCTCGTACAGCGCTTC-GAACTCGTCGCCGTAGACATCGGCAAGAC 192021
Query 146912 CGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTCACGCGTTCCATAA 146971
| || ||| ||||| || | ||| | ||| || ||||| | || || | ||| |
Sbjct 192020 CAGGGCACTCGTTGGGGCACATCAGGGTCCAATCGCCGTTCTCTTGGACACGCTTCATGA 191961
Query 146972 ACAAATCGGGAATCCAAAG-GCCCAGCATCAAGTCGCGAGCCTTGGCGTCCTCGGAGCCC 147030
|||| ||||||||||| || || || | | ||||| || | ||||| ||
Sbjct 191960 ACAAGTCGGGAATCCACAGAGCGTAG-AAGAGATCGCGGGCGCGAACCTCCTCCTTTCCG 191902
Query 147031 ATGTTGCGTCTCAAGTTGAGGACATCGTAAATTTCCGGATGCCAAGGCTCCACGTATGCG 147090
||| | || || |||| | | | || | ||||| ||||| | ||| |
Sbjct 191901 TGGTTCTTGCGCAGGTCCAGGAAGCCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATG 191842
Query 147091 GCGAGTGCGCCTTTTCGC---TTACCGCCCTGATCGACGTGGCGCACCATGTTATTGAAG 147147
|| | || ||| ||| || || ||||| ||||||| ||| | |||| ||| |
Sbjct 191841 GCAAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGTAT 191782
Query 147148 ACTCGTAACATGGACACGAGGCCGCCGGATTTT---GTGGTGCCG---TTGTATTGAG-C 147200
|| || | ||||| | ||| ||| ||| || |||||||| |||| ||| |
Sbjct 191781 ACACGGAGCATGGGAATGAGACCGTTTGATGTTCCGTTGGTGCCGCCAATGTA-GGAGCC 191723
Query 147201 GCTG--ACG----CTTTGCACGCTCAGCCCGAGACCTCCGCCCAGATTCGAAATCAAAGC 147254
| || ||| | || ||| | || || | ||| || | || || ||||||||
Sbjct 191722 GGTGGCACGGATTCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAAGC 191663
Query 147255 G-GACTCGTGCAAGGTCTTGTAGATGCCGTCGATGCTGTCTTCCTTGATG-CATTGCAGG 147312
| | || || | || | ||||||||||||||||||||||||||| ||| | || |||
Sbjct 191662 GCAAGTCTTG-AGTGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCATGTCGATG-AGG 191605
Query 147313 AAACACGAACACATTTGGGGACGACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGC 147372
|| || || |||| ||||| ||||| || ||||| || || ||||||
Sbjct 191604 AAGCAGGAGGACATCTGGGGTGATGGTGTGCCTGCGTTGAACAGGGTTGGCGAGGCGTGT 191545
Query 147373 GTGAACGTGC-CCAGACTCATCAATTGATACGTTTCAATGGCGCTCATAACGTCATCGCC 147431
|| || || | | ||| | | || || |||||||| | || |||||||||
Sbjct 191544 GT-AAAGTACTTTTGCGACATGTAGTCGTAAGTCTCAATGGCCTTTTCAATGTCATCGCC 191486
Query 147432 GTGAATGGCCAGGGCGACGCGCATGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATT 147491
||| ||| | | ||| || |||||||||||||| || || || || |||| | | ||||
Sbjct 191485 GTGTATGCCGACGGCAACTCGCATGAGCATGTGTTGTGGGCGCTCGGCAACCTTGCCATT 191426
Query 147492 GAC 147494
||
Sbjct 191425 TAC 191423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475498339283360
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