Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq225 131 2e-25 seq178 105 8e-18 seq385 93.3 5e-14 >seq225 Length=197037 Score = 131 bits (144), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || ||| | ||||| ||| | |||| |||||| ||||| |||||||| || Sbjct 138917 CCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAG 138858 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || || |||| || || ||||| || || || || | || |||||||| | || Sbjct 138857 AGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGG 138798 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545 | || ||||||||| |||||| ||| | ||| | | | |||||||| |||||||| Sbjct 138797 ATGCCCTCCTTGTCTTGGATCTTGGACTTTA-CGTTGTCGATGGTGTCGCTGGATTCCAC 138739 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| || || || || || || || |||||||||||| Sbjct 138738 CTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 138690 Score = 122 bits (134), Expect = 1e-22 Identities = 138/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| || |||||| ||||| ||||||||||| || ||||| | || || Sbjct 138160 ACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 138101 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||||||||||||||| |||||||| |||||||| | || | || |||||||||| Sbjct 138100 AGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 138041 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| |||||| | | | |||||| || ||||| || | ||||| || ||| Sbjct 138040 ATCTTGCTCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTG 137981 Query 46565 CCCGT 46569 || || Sbjct 137980 CCGGT 137976 Score = 122 bits (134), Expect = 1e-22 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| || ||||||| || |||||| || || ||||||||||| || ||||| | Sbjct 138449 CGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCA 138390 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || ||||| ||||| |||||||| |||| ||||||||| || | || | || ||||||| Sbjct 138389 TCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTG 138330 Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 || |||||| ||||| ||| | | | |||||| ||| || || || | |||||| Sbjct 138329 TCTTGAATCTTCGACTTGA-CGTTGTCAATGGTGTCGGACGACTCGACTTCAAGCGTGAT 138271 Query 46558 GGTTTTGCCCGTCA 46571 ||| ||||| |||| Sbjct 138270 GGTCTTGCCGGTCA 138257 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| || |||||| ||||| ||||||||| ||||| || |||| ||| Sbjct 138671 ACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCG 138612 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || ||||| || | ||||| ||||| | || | | |||||||||| Sbjct 138611 AGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGA 138552 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||||| | | | |||||| || || || |||| |||||| || ||| Sbjct 138551 ATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTCTTG 138492 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || || || ||||| ||||| Sbjct 138491 CCAGTCAGGGTCTTGACGAAGATCTGCAT 138463 >seq178 Length=462551 Score = 105 bits (116), Expect = 8e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||| ||||| ||||||||||| || ||||| | || ||| Sbjct 349863 ACCAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 349922 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| |||||||| ||||| ||||| ||||| | || | || |||||||||| | Sbjct 349923 AGTTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 349982 Query 46505 ATCTTCTTCTTGA 46517 ||||| ||||| Sbjct 349983 ATCTTGGACTTGA 349995 >seq385 Length=1101030 Score = 93.3 bits (102), Expect = 5e-14 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || || ||||| |||| ||||| |||||||||||||| Sbjct 327376 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 327435 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || | ||||||||||| | || | || ||||||||| Sbjct 327436 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 327474 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565235474891280