Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq225 131 2e-25
seq178 105 8e-18
seq385 93.3 5e-14
>seq225
Length=197037
Score = 131 bits (144), Expect = 2e-25
Identities = 168/229 (73%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| || | || ||| | ||||| ||| | |||| |||||| ||||| |||||||| ||
Sbjct 138917 CCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAG 138858
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|| || || |||| || || ||||| || || || || | || |||||||| | ||
Sbjct 138857 AGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGG 138798
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCAC 46545
| || ||||||||| |||||| ||| | ||| | | | |||||||| ||||||||
Sbjct 138797 ATGCCCTCCTTGTCTTGGATCTTGGACTTTA-CGTTGTCGATGGTGTCGCTGGATTCCAC 138739
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594
|||| |||||||| || || || || || || || ||||||||||||
Sbjct 138738 CTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 138690
Score = 122 bits (134), Expect = 1e-22
Identities = 138/185 (75%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| || |||||| ||||| ||||||||||| || ||||| | || ||
Sbjct 138160 ACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCCTCA 138101
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
||||||||||||||||| |||||||| |||||||| | || | || ||||||||||
Sbjct 138100 AGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGA 138041
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| |||||| | | | |||||| || ||||| || | ||||| || |||
Sbjct 138040 ATCTTGCTCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTCTTG 137981
Query 46565 CCCGT 46569
|| ||
Sbjct 137980 CCGGT 137976
Score = 122 bits (134), Expect = 1e-22
Identities = 145/194 (75%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| || ||||||| || |||||| || || ||||||||||| || ||||| |
Sbjct 138449 CGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCA 138390
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||| ||||| |||||||| |||| ||||||||| || | || | || |||||||
Sbjct 138389 TCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTG 138330
Query 46499 TCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|| |||||| ||||| ||| | | | |||||| ||| || || || | ||||||
Sbjct 138329 TCTTGAATCTTCGACTTGA-CGTTGTCAATGGTGTCGGACGACTCGACTTCAAGCGTGAT 138271
Query 46558 GGTTTTGCCCGTCA 46571
||| ||||| ||||
Sbjct 138270 GGTCTTGCCGGTCA 138257
Score = 116 bits (128), Expect = 4e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
|| ||||||| || |||||| ||||| ||||||||| ||||| || |||| |||
Sbjct 138671 ACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCG 138612
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|||||||| || ||||| || | ||||| ||||| | || | | ||||||||||
Sbjct 138611 AGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGA 138552
Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564
||||| ||||| | | | |||||| || || || |||| |||||| || |||
Sbjct 138551 ATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTCTTG 138492
Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||||| || || || ||||| |||||
Sbjct 138491 CCAGTCAGGGTCTTGACGAAGATCTGCAT 138463
>seq178
Length=462551
Score = 105 bits (116), Expect = 8e-18
Identities = 103/133 (77%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444
||||| || | ||| |||||| ||||| ||||||||||| || ||||| | || |||
Sbjct 349863 ACCAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCCTCG 349922
Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504
|| ||||| |||||||| ||||| ||||| ||||| | || | || |||||||||| |
Sbjct 349923 AGTTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 349982
Query 46505 ATCTTCTTCTTGA 46517
||||| |||||
Sbjct 349983 ATCTTGGACTTGA 349995
>seq385
Length=1101030
Score = 93.3 bits (102), Expect = 5e-14
Identities = 80/99 (81%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| || || ||||| |||| ||||| ||||||||||||||
Sbjct 327376 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 327435
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| | ||||||||||| | || | || |||||||||
Sbjct 327436 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 327474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565235474891280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |