Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq403 242 4e-59
seq225 123 2e-23
seq385 98.7 1e-15
seq178 89.7 5e-13
>seq403
Length=285126
Score = 242 bits (268), Expect = 4e-59
Identities = 591/894 (66%), Gaps = 65/894 (7%)
Strand=Plus/Plus
Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663
||||| || || || || ||||| || || || || || || | | || ||| |
Sbjct 107399 TTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTC 107458
Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720
||| || || |||||||||| | |||||||| ||||| |||||| || | | |
Sbjct 107459 TCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGGGGTTGCCGAG-AG--CAAGG 107515
Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779
||||| | |||||| |||||||| ||||| || ||||| | | || | | | || ||
Sbjct 107516 AGCAGACGGTCGGCGACGAACTCAATGTACTGGCACATGAGAGTGGCGTTCATG-CCGAG 107574
Query 132780 CAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838
||| |||| || ||||| ||| |||| || ||||| || |||| || |||||||
Sbjct 107575 AAGAGCGCAA-GGAAGCGCGTCGCTGAGGAACTCCTGCTCAATCTCGACAGCTTCGGTGA 107633
Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898
||| || || ||| ||| || || | | | ||| | || ||| |
Sbjct 107634 TGATAGCCTCGACAGCAGCCTTGCTGGGGCGGTTGTTGAGGAGAGAGAAGAGCAGGCAGG 107693
Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958
|||||||| |||| |||||||| | || ||||| |||||| ||| || | ||||
Sbjct 107694 CAAAGTCGGTGTGCATACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACCGG 107753
Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018
||||||| || || || || | ||| || |||| |||||| || ||||||| |
Sbjct 107754 GCATGAGACCACGCTTCTTCAACCAGAAGATGGAGGCGAATGAACCGCTGAAGAAGATAC 107813
Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078
|||| ||||| || || || || || || | | | || |||| | ||| | |||||
Sbjct 107814 CCTCAACGGCGGCAAACGCGACAAGACGGTTGGCAAAGGTGGAGTTCTTGTCAGAGATCC 107873
Query 133079 AGCGCAGCGCCCATTCGGCCTTTT---------------CTTTGACGC------------ 133111
| || || ||||| || ||||| | || ||||||
Sbjct 107874 ATCGAAGAGCCCAATCAGCCTTCTTGCGGATGCAGGGAACTGTGACGCGTTAGACGTGTA 107933
Query 133112 ---------------ACGGCATC-----GTT-TCGATGGCGTTCAACAAACGGAGTTTCT 133150
| ||| | ||| || |||||||| || | | | || |
Sbjct 107934 AATGTGACGCGATGTAGGGCGACTTACTGTTGTCAATGGCGTTGAAGAG--GTACTTGCG 107991
Query 133151 CTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTT 133208
|| || || ||| | ||| |||||||| ||| || || | || ||||| |||||
Sbjct 107992 CTGCCTGGGCTCGCTGATGTATGTGTCGATAAGGAGAGAGTAAGTCTCAGAGTGGACGTT 108051
Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268
|||||| ||| || || ||||| ||||| ||||||||| | || ||||| |
Sbjct 108052 CTCCATCATGATCTGGAAACCGTAGAAGCAGCGCGCCTCGGGAATTTGTACTTCGCTGGA 108111
Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328
||| || ||||||| || |||||||| ||||| || ||||||||||||||| || ||
Sbjct 108112 GAAGCGTTCGACCAAGTTCTCGTTGACAATGCCATCCGAGGCGGCGAAAAAGGCAAGGAC 108171
Query 133329 GTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTT 133385
|| ||||||| |||||||| ||||||||| ||| | ||||||| | ||||||
Sbjct 108172 ATGGGAGATGAAAAAGCGCTCGTCGTCGTTCAATCGCTTGTTCCAGTCGTGAAGGTCCTT 108231
Query 133386 GGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
||| || || | ||||||| ||||||| || || |||||||| || ||||||||
Sbjct 108232 GGAGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 108285
>seq225
Length=197037
Score = 123 bits (136), Expect = 2e-23
Identities = 161/219 (74%), Gaps = 4/219 (2%)
Strand=Plus/Plus
Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302
||||||||| ||||| || || ||||| || || ||||||||| | || || || |||
Sbjct 138690 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCTTGGAGGTGGAATCCAG 138749
Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
||||| | | | |||| ||||| || |||| ||||| ||||| || || | |||
Sbjct 138750 CGACACCATCGACAACG--TAAAGTCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGAC 138807
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| || || ||||| | || || || || || || |||| || |||||| ||||||
Sbjct 138808 CAGCAACGTCTCATCTTTGCTGGTAAGCAACTTGAAGACGGACGGACCCTCTCAGACTAC 138867
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||||| ||||| | || || ||||||||||| |||
Sbjct 138868 AACATCCAGAAGGAGTCTACACTCCATTTGGTGCTCCGT 138906
Score = 100 bits (110), Expect = 3e-16
Identities = 154/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || || || || ||||| || ||||| | || || ||| | |
Sbjct 138463 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGTTGGAAGTTGAGTCTTCA 138522
Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362
|||| | || || | | || || || | ||||| ||||| || || | |||||
Sbjct 138523 GACACGATTGACAATG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCA 138581
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
|||||| ||||| | ||| || || ||||| || |||| || || || | |||||||||
Sbjct 138582 ACAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGTACTCTGAGCGACTACAA 138641
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| ||||| | || |||||| | || || |||
Sbjct 138642 CATCCAGAAGGAGTCCACCCTGCATCTTGTCCTCCGT 138678
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Plus
Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326
|| ||||| |||||||| | || |||||| | |||||| | | | |||| | ||
Sbjct 138259 ACCGGCAAGACCATCACGCTTGAAGTCGAGTCGTCCGACACCATTGACAACG-TCAAGTC 138317
Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386
|| || | ||||| ||||| |||||| | || || ||||| || |||| ||| || ||
Sbjct 138318 GAAGATTCAAGACAAGGAGGGCATTCCCCCGGATCAGCAGCGCCTGATTTTCGCCGGAAA 138377
Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446
|| || || || | |||||||| |||||||||||| || ||||| | || |||||
Sbjct 138378 GCAACTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTGCA 138437
Query 38447 TTTGGTGCTGCG 38458
| | || |||||
Sbjct 138438 TCTCGTCCTGCG 138449
Score = 95.1 bits (104), Expect = 1e-14
Identities = 140/195 (72%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324
|||| ||||| || |||||| | || || ||| | |||||| | | | || | | ||
Sbjct 137974 TCACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAATG--TCAA 138031
Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383
|| || || | ||||| ||||| |||||| | ||||| || || | || | ||| ||
Sbjct 138032 GAGCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAACGCTTGATCTTCGCCGG 138091
Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443
||| ||||| || || | |||||||| ||||||||||||||| ||||| | || ||
Sbjct 138092 CAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCT 138151
Query 38444 GCATTTGGTGCTGCG 38458
|||| | || || ||
Sbjct 138152 GCATCTTGTCCTCCG 138166
>seq385
Length=1101030
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| ||||| |||||| | ||||| ||||| ||||| | ||| ||||| || || ||
Sbjct 327474 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTCGAG 327415
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|||| |||||||| |||||||||||||| ||||| |||| || || ||||| ||
Sbjct 327414 GACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTC 327355
Query 38457 CG 38458
||
Sbjct 327354 CG 327353
>seq178
Length=462551
Score = 89.7 bits (98), Expect = 5e-13
Identities = 99/132 (75%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| |||||| | ||||||||||| | || | ||| || ||
Sbjct 349987 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGAAAG 349928
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|| || || || | |||||||| ||||||||||||||| ||||| |||| || ||
Sbjct 349927 CAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACACTCCAC 349868
Query 38448 TTGGTGCTGCGT 38459
|||| || |||
Sbjct 349867 CTGGTCCTCCGT 349856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500170211605760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |