Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq403 242 4e-59 seq225 123 2e-23 seq385 98.7 1e-15 seq178 89.7 5e-13 >seq403 Length=285126 Score = 242 bits (268), Expect = 4e-59 Identities = 591/894 (66%), Gaps = 65/894 (7%) Strand=Plus/Plus Query 132604 TTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGC 132663 ||||| || || || || ||||| || || || || || || | | || ||| | Sbjct 107399 TTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATGTTC 107458 Query 132664 GTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGG---TGCCGATCAGGTCGACG 132720 ||| || || |||||||||| | |||||||| ||||| |||||| || | | | Sbjct 107459 TCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGGGGTTGCCGAG-AG--CAAGG 107515 Query 132721 AGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAG 132779 ||||| | |||||| |||||||| ||||| || ||||| | | || | | | || || Sbjct 107516 AGCAGACGGTCGGCGACGAACTCAATGTACTGGCACATGAGAGTGGCGTTCATG-CCGAG 107574 Query 132780 CAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGA 132838 ||| |||| || ||||| ||| |||| || ||||| || |||| || ||||||| Sbjct 107575 AAGAGCGCAA-GGAAGCGCGTCGCTGAGGAACTCCTGCTCAATCTCGACAGCTTCGGTGA 107633 Query 132839 CGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAG 132898 ||| || || ||| ||| || || | | | ||| | || ||| | Sbjct 107634 TGATAGCCTCGACAGCAGCCTTGCTGGGGCGGTTGTTGAGGAGAGAGAAGAGCAGGCAGG 107693 Query 132899 CAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGG 132958 |||||||| |||| |||||||| | || ||||| |||||| ||| || | |||| Sbjct 107694 CAAAGTCGGTGTGCATACCCTCGTCACGAGAGATGAGCTCGTTGGAGAAGGTAAGACCGG 107753 Query 132959 GCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGC 133018 ||||||| || || || || | ||| || |||| |||||| || ||||||| | Sbjct 107754 GCATGAGACCACGCTTCTTCAACCAGAAGATGGAGGCGAATGAACCGCTGAAGAAGATAC 107813 Query 133019 CCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCC 133078 |||| ||||| || || || || || || | | | || |||| | ||| | ||||| Sbjct 107814 CCTCAACGGCGGCAAACGCGACAAGACGGTTGGCAAAGGTGGAGTTCTTGTCAGAGATCC 107873 Query 133079 AGCGCAGCGCCCATTCGGCCTTTT---------------CTTTGACGC------------ 133111 | || || ||||| || ||||| | || |||||| Sbjct 107874 ATCGAAGAGCCCAATCAGCCTTCTTGCGGATGCAGGGAACTGTGACGCGTTAGACGTGTA 107933 Query 133112 ---------------ACGGCATC-----GTT-TCGATGGCGTTCAACAAACGGAGTTTCT 133150 | ||| | ||| || |||||||| || | | | || | Sbjct 107934 AATGTGACGCGATGTAGGGCGACTTACTGTTGTCAATGGCGTTGAAGAG--GTACTTGCG 107991 Query 133151 CTTCCGAGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTT 133208 || || || ||| | ||| |||||||| ||| || || | || ||||| ||||| Sbjct 107992 CTGCCTGGGCTCGCTGATGTATGTGTCGATAAGGAGAGAGTAAGTCTCAGAGTGGACGTT 108051 Query 133209 CTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGC 133268 |||||| ||| || || ||||| ||||| ||||||||| | || ||||| | Sbjct 108052 CTCCATCATGATCTGGAAACCGTAGAAGCAGCGCGCCTCGGGAATTTGTACTTCGCTGGA 108111 Query 133269 GAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCAC 133328 ||| || ||||||| || |||||||| ||||| || ||||||||||||||| || || Sbjct 108112 GAAGCGTTCGACCAAGTTCTCGTTGACAATGCCATCCGAGGCGGCGAAAAAGGCAAGGAC 108171 Query 133329 GTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGC---TCCCAGTCGCGCGTGTCCTT 133385 || ||||||| |||||||| ||||||||| ||| | ||||||| | |||||| Sbjct 108172 ATGGGAGATGAAAAAGCGCTCGTCGTCGTTCAATCGCTTGTTCCAGTCGTGAAGGTCCTT 108231 Query 133386 GGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 ||| || || | ||||||| ||||||| || || |||||||| || |||||||| Sbjct 108232 GGAGAGATCAATCTCCTCGGCGGTCCAGAAAGAAGCCTCGGCCTTCTTGTACAT 108285 >seq225 Length=197037 Score = 123 bits (136), Expect = 2e-23 Identities = 161/219 (74%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || ||||| || || ||||||||| | || || || ||| Sbjct 138690 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCTTGGAGGTGGAATCCAG 138749 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 ||||| | | | |||| ||||| || |||| ||||| ||||| || || | ||| Sbjct 138750 CGACACCATCGACAACG--TAAAGTCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGAC 138807 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || ||||| | || || || || || || |||| || |||||| |||||| Sbjct 138808 CAGCAACGTCTCATCTTTGCTGGTAAGCAACTTGAAGACGGACGGACCCTCTCAGACTAC 138867 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||| ||||| | || || ||||||||||| ||| Sbjct 138868 AACATCCAGAAGGAGTCTACACTCCATTTGGTGCTCCGT 138906 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| || ||||| | || || ||| | | Sbjct 138463 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGTTGGAAGTTGAGTCTTCA 138522 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | || || | | || || || | ||||| ||||| || || | ||||| Sbjct 138523 GACACGATTGACAATG-TCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCA 138581 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | ||| || || ||||| || |||| || || || | ||||||||| Sbjct 138582 ACAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGTACTCTGAGCGACTACAA 138641 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || |||||| | || || ||| Sbjct 138642 CATCCAGAAGGAGTCCACCCTGCATCTTGTCCTCCGT 138678 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38268 ACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGA 38326 || ||||| |||||||| | || |||||| | |||||| | | | |||| | || Sbjct 138259 ACCGGCAAGACCATCACGCTTGAAGTCGAGTCGTCCGACACCATTGACAACG-TCAAGTC 138317 Query 38327 AAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAA 38386 || || | ||||| ||||| |||||| | || || ||||| || |||| ||| || || Sbjct 138318 GAAGATTCAAGACAAGGAGGGCATTCCCCCGGATCAGCAGCGCCTGATTTTCGCCGGAAA 138377 Query 38387 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCA 38446 || || || || | |||||||| |||||||||||| || ||||| | || ||||| Sbjct 138378 GCAACTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTGCA 138437 Query 38447 TTTGGTGCTGCG 38458 | | || ||||| Sbjct 138438 TCTCGTCCTGCG 138449 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| || |||||| | || || ||| | |||||| | | | || | | || Sbjct 137974 TCACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAATG--TCAA 138031 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || || | ||||| ||||| |||||| | ||||| || || | || | ||| || Sbjct 138032 GAGCAAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAACGCTTGATCTTCGCCGG 138091 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || || | |||||||| ||||||||||||||| ||||| | || || Sbjct 138092 CAAGCAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCT 138151 Query 38444 GCATTTGGTGCTGCG 38458 |||| | || || || Sbjct 138152 GCATCTTGTCCTCCG 138166 >seq385 Length=1101030 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 ||||| ||||| |||||| | ||||| ||||| ||||| | ||| ||||| || || || Sbjct 327474 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTCGAG 327415 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 |||| |||||||| |||||||||||||| ||||| |||| || || ||||| || Sbjct 327414 GACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTC 327355 Query 38457 CG 38458 || Sbjct 327354 CG 327353 >seq178 Length=462551 Score = 89.7 bits (98), Expect = 5e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| |||||| | ||||||||||| | || | ||| || || Sbjct 349987 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGAAAG 349928 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 || || || || | |||||||| ||||||||||||||| ||||| |||| || || Sbjct 349927 CAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACACTCCAC 349868 Query 38448 TTGGTGCTGCGT 38459 |||| || ||| Sbjct 349867 CTGGTCCTCCGT 349856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170211605760