Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq393 333 3e-86 seq403 127 3e-24 seq272 91.5 2e-13 >seq393 Length=255347 Score = 333 bits (368), Expect = 3e-86 Identities = 1140/1745 (65%), Gaps = 43/1745 (2%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 |||||| ||||| ||||||| || || |||| || || || || || ||||| | Sbjct 191446 CCCACAACACATGCTCATGCGAGTTGCCGTCGGCATACACGGCGATGACATTGAAAAGGC 191505 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTG-GTATGTTCATCCACGCAACACCAACCCTCT 111729 | ||||| |||||| | ||||| | ||| || | ||||| | |||||||| | Sbjct 191506 CATTGAGACTTACGACTACATGTCGCAAAAGTACTTT-ACACACGCCTCGCCAACCCTGT 191564 Query 111730 TCAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGG 111789 ||||||| || |||||| |||||| |||||| || ||||| || | | ||||| | Sbjct 191565 TCAACGCAGGCACACCATCACCCCAGATGTCCTCCTGCTTCCTCATCGACATGAAGGAAG 191624 Query 111790 ATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTG 111849 | ||| | ||||| |||| ||| |||| || || ||||| ||| |||| Sbjct 191625 ACAGCATCGACGGCATCTACGACACACTCAAGACTTGCGCTTTGATCTCCAAGACCGCTG 191684 Query 111850 GTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAGGTAC 111907 | ||||| || | || |||| || | |||| | | ||| || || | || || Sbjct 191685 GCGGTATTGGTCTCAACGTCCACCGAATCCGTGCCACC--GGCTCCTACATTGGCGGCAC 191742 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 || || |||| | ||| | ||||| ||||| || |||| ||| ||| || ||||| Sbjct 191743 CAACGGAACATCAAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACCGCTCGCTA 191802 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 || |||| | ||| ||| | ||| || | || |||| ||||||||||| Sbjct 191803 CGTCGACCAGGGTGGCAACAAGCGCCC--AGGTGCCTTTGCCA-TCTACCTTGAGCCATG 191859 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 |||||| ||| || | | ||||| || |||| ||||| || | ||||||| || Sbjct 191860 GCACGCTGATGTCTTTGGCTTCCTGGACCTGCGCAAGAACCACGGAAAGGAGGAGGTTCG 191919 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 |||||||||||||| |||||| |||||||| || | ||||||||| | || | || Sbjct 191920 CGCCCGCGATCTCTTCTACGCTCTGTGGATTCCCGACTTGTTCATGAAGCGTGTCCAAGA 191979 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || ||| ||||| | || | || || || || || ||||| |||||| | || Sbjct 191980 GAACGGCGATTGGACCCTGATGTGCCCCAACGAGTGCCCTGGTCTTGCCGATGTCTACGG 192039 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAG--AAAGTCGGGCGACTGCGACG 112259 || ||||| ||||| || ||| | ||||| |||| ||| |||| | | |||| Sbjct 192040 CGACGAGTTCGAAGCGCTGTACGAGAGCTACGA-GAAGCAAAACAAGGGCCGC-GAGACG 192097 Query 112260 GTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACC 112318 || | || | || | ||||| | ||||| || || |||| || |||||||||| || Sbjct 192098 GTTCGCGC-CCAGAAGCTGTGGTATGCTATCCTTGAGGCTCAGACTGAGACTGGTAACCC 192156 Query 112319 ATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGAT 112378 | |||||| ||||| || || || |||| ||||| || || ||||| |||| || Sbjct 192157 CTTTATGCTCTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCAT 192216 Query 112379 CAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGT 112438 || ||||||||||| || || || | || | || | |||||| ||||| Sbjct 192217 TCGCAGCTCCAACCTCTGCACCGAGATTGTCGAGTACACTGCTCCTGATGAGGTCGCTGT 192276 Query 112439 GTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTG 112497 || ||||| || || ||||||| || | ||| || | || | || |||| Sbjct 192277 CTGCAACCTGGCTTCGCTCGCTCTGCCTTCATTTGTCGACTACAAGCGCGGCGA-GTTTG 192335 Query 112498 ATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTG 112557 | | | |||| || ||||| ||||| || ||||| ||| | |||| |||||| Sbjct 192336 ACTTTCAAAAGCTGCACGAGGTTACCCAAGTCGTCACCCGCAACTTGAACAAGATTATTG 192395 Query 112558 ATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 112617 | || |||||||||||| || || || | | ||||| || |||| Sbjct 192396 AGGTCAACCACTACCCCGTTGAGGAGGCGCGCCGCAGCAACTTCCGCCACCGACCTATTG 192455 Query 112618 GTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCC 112676 || | ||||| || ||||| || |||| ||| | | || |||| | || || ||| Sbjct 192456 GTATGGGTGTACAGGGTCTGGCCGATGCTTTCCTCGCCCTG-CGCCTGCCCTTCGAGTCC 192514 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGAG 112736 || | || ||| | |||| | || || ||||| || || ||||||||||| Sbjct 192515 AACCAGGCCAAGAAGCTCAACATTCAGATCTTCGAGACCATCTACCACGCCGCTCTGACT 192574 Query 112737 GCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCT 112796 || | || | || ||| |||||| || || |||| ||||| ||||| | Sbjct 192575 TCGTCCTGCGATATTGCCAAGGAACTTGGTCCTTACGAGACCTACGAGGGATCTCCTGTC 192634 Query 112797 TCACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACT 112854 || |||||| | || || | || ||||||| || || || | | || || |||| Sbjct 192635 TC-CAAGGGCATTCTCCAGTACGACATGTGGG-AGAAGACCCCTACCGATCTCTGGGACT 192692 Query 112855 GGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCAC 112914 |||| | ||||||| || || | ||| | || ||| || | || |||| Sbjct 192693 GGGATGAGCTCAAGGCCAAGATTGCCCAGCACGGTGTCCGCAACTCGCTGCTCATCGCAC 192752 Query 112915 CAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACA 112974 | |||||||| ||||||||| | || || | || || || || ||||| || || |||| Sbjct 192753 CCATGCCAACTGCCTCCACCTCGCAGATTCTCGGAAACAACGAGTGCTTCGAGCCATACA 192812 Query 112975 CGACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT 113033 | | ||||| || ||| | | ||||| || ||||| | | |||||| ||| Sbjct 192813 CTTCCAACATTTACTCT-CGCCGTGTGCTCGCTGGTGAGTTCCAGGTGGTCAAC--CCAT 192869 Query 113034 --CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGG 113091 || | | ||||| || || || || ||||| || | |||||| | | ||| Sbjct 192870 GGCTGCTCAAGGACCTTGTCGACATGGGCCTGTGGTCTGAGAACATGAAGAACCGCATCA 192929 Query 113092 TGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGT 113151 | | ||||||||||||| | ||| |||| || ||||| | ||| || | | Sbjct 192930 TCGCCGAGGGTGGTTCCATTGCACGAATTCCCAATATCCCCGATGAGACCAAGGAGCTTT 192989 Query 113152 ACCGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGG 113209 || || |||||||||||| | | || | |||| || ||||| || || ||||| Sbjct 192990 ACAAGACTGTTTGGGAAATCTCGCAGCGCAGAA--TCATCGAGATGGCTGCCGACCGTGG 193047 Query 113210 TCGCTTCATTGATCAAAGTCAAAGT--ATGAATCTATTCATGGAAAGTCCAACGATGTCC 113267 | ||| || || | |||| ||| |||| | |||| | || || ||| | Sbjct 193048 TGCCTTTATCGACC--AGTCCCAGTCGTTGAACATCCACATGAAGGAGCCTACCATGGGC 193105 Query 113268 AAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTAC 113327 ||| || | || |||||| | | |||||| ||||| || ||||| ||||| ||| Sbjct 193106 AAGATCACGTCGATGCACTTTGCTGGATGGAAGCTTGGTCTTAAGACGGGCATGTACTAC 193165 Query 113328 CTCCG 113332 ||||| Sbjct 193166 CTCCG 193170 >seq403 Length=285126 Score = 127 bits (140), Expect = 3e-24 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 102108 ACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAAG 102164 |||||||| || || | ||||| || ||||||||| | ||| | ||| | || Sbjct 107916 ACAGTTCCCTGCATCCGCAAGAAGGCTGATTGGGCTCTTCGATGGATCTCTGACAAGAAC 107857 Query 102165 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 102224 || ||||||| | || || |||| ||||| |||||||||||||||||| Sbjct 107856 TCCA---CCTTTGCCAACCGTCTTGTCGCGTTTGCCGCCGTTGAGGGTATCTTCTTCAGC 107800 Query 102225 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 102284 ||||| ||| | | || | ||| | |||||||| ||||||||||| ||||| |||| Sbjct 107799 GGTTCATTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGTCTTACCTTC 107740 Query 102285 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||||||||||| ||||||||||||||||| | ||| || ||||| Sbjct 107739 TCCAACGAGCTCATCTCTCGTGACGAGGGTATGCACACCGACTTTGC 107693 >seq272 Length=11714 Score = 91.5 bits (100), Expect = 2e-13 Identities = 273/415 (66%), Gaps = 21/415 (5%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||||||||| || || | ||| || | || | || ||| || || || | || Sbjct 9399 ATCAAAGCGACCCGGTCGCATGAGGGCTTTGTCCAAGACATCCGGTCGGTTAGTACCTGC 9340 Query 15947 GATGACAACAATACCTGTTTCGT--TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 | || || | | |||| ||| | | ||||||||||| || || | || ||||||| Sbjct 9339 TAGAACGACGA--CTTGTTCCGTAGTGTTGAAACCATCCATTTCAGTAAGAATCTGGTTA 9282 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCA--CTGCGTTGCTTTCCCA 16062 | || ||| || || || || || | || ||| | |||| ||| | || Sbjct 9281 AGGGTAGCTTCGCGCTCGTCGTT-GCCG-----CCTCCAAAATTCTGCTTTGATCGAGCA 9228 Query 16063 CG-------GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT 16115 || || ||||| ||||| ||||||| |||||||||| | | | |||||| Sbjct 9227 CGACCGATAGCGTCAATTTCATCGATGAAGATGATGCATGGTGTACTCTTACGAGCGTTG 9168 Query 16116 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175 | || || || || || || |||||| ||||| ||||||||||| || || | | | Sbjct 9167 GCGAATAGGTCTCGGACTCGTGAGGCGCCGACACCCACAAACATCTCGACGAACTCAGAG 9108 Query 16176 GCG-GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 || || | || ||| || ||| || || || || |||| ||| || || || Sbjct 9107 CCGCTCACGCT-GAAGAATGGCACACCCGACTCTCCAGCTGTGGCCTTGGCAAGTAGCGT 9049 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 ||||| |||||||| || | |||| ||||| || |||||||| |||||| Sbjct 9048 TTTACCTGTACCTGGGGATCCAGACAGGATAGCACCGCGGGGAATCTTTGCGCCA 8994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620739187658080