Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq393 156 5e-33 seq296 104 3e-17 seq349 86.0 7e-12 >seq393 Length=255347 Score = 156 bits (172), Expect = 5e-33 Identities = 598/928 (64%), Gaps = 17/928 (2%) Strand=Plus/Minus Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 || ||||| | || || || ||||| |||| ||| || | ||||| || | | Sbjct 192303 GGCAGAGCGAGCGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGCAGTGTACTCGACA 192244 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 || || || || | |||||| || |||| |||| ||||||||| || ||| | Sbjct 192243 ATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGG 192184 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||||| |||||||| |||||||| | ||| ||||||| || ||||| | || || || Sbjct 192183 TTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCAGTCTGAGCCTCAAGGATA 192124 Query 110461 GCCTTCCATA-CATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACTT 110519 || | ||| | | || | |||| | || || || | || || |||||| | Sbjct 192123 GCATACCACAGCTTCTG-GGCGCGAACCGTCTCGCGGCCCTTGTTTTGCTTCTCGTAGCT 192065 Query 110520 GGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGG 110579 ||||| | || || || | ||||| ||||| | |||||| || || ||| Sbjct 192064 CTCGTACAGCGCTTCGAACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGG 192005 Query 110580 ACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCA 110639 || | |||| ||||| || ||| | || | ||||||||||| ||| |||||||| Sbjct 192004 GCACATCAGGGTCCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCA 191945 Query 110640 CATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTC 110699 || || |||| || || ||| ||| |||| || | || ||||| ||| || || Sbjct 191944 CAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTC 191885 Query 110700 CAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC------ 110753 || ||| | | || ||| | ||||||||| || || |||| || | || || Sbjct 191884 CAGGAAGCCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCG 191825 Query 110754 CTTACGACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGG 110813 ||| | | || |||||| || ||||| || ||| ||| | || | |||||| || Sbjct 191824 CTT--GTTG-CCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGG 191768 Query 110814 AATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTC 110873 ||| | || | ||| || || || || | ||| ||| ||||||| || Sbjct 191767 AATGAGACCGTTTGATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGATTCG 191708 Query 110874 GTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTG 110932 ||||| | | ||||||||| || || ||| || || | | ||| |||||| Sbjct 191707 GTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCT-TGAGTG 191649 Query 110933 TACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCT 110992 | | || || || || || ||| |||| || | || || ||||| || ||||||| Sbjct 191648 TGTCGTAGATGCCGTCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCT 191589 Query 110993 GAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAG-AC-CTTG 111050 | || || || || || ||||| || || || | || || || | || || ||| Sbjct 191588 GGGGTGATGGTGTGCCTGCGTTGAACAGGGTTGGCGAGGCGTG--TGTAAAGTACTTTTG 191531 Query 111051 GGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGC 111110 ||||| | || ||| || || | || | || | ||||| || || | ||| Sbjct 191530 CGACATGTAGTCGTAAGTCTCAATGGCCTTTTCAATGTCATCGCCGTGTATGCCGACGGC 191471 Query 111111 AACTCGCATGAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTA 111170 ||||||||||| ||| | ||| || ||| | ||| |||| ||||| | ||||| Sbjct 191470 AACTCGCATGAGCATGTGTTGTGGGCGCTCGGCAACCTTGCCATTTACACGGAGGAGGTA 191411 Query 111171 ACTCTTCTCTAGGGTCTTGAGACCAAAG 111198 | ||| || ||||||| || ||| Sbjct 191410 GGACCGCTCGAGCGTCTTGAAGCCGAAG 191383 Score = 109 bits (120), Expect = 6e-19 Identities = 294/448 (66%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| ||||| || |||||| ||||||| | | ||||| || | | Sbjct 193170 CGGAGGTAGTACATGCCCGTCTTAAGACCAAGCTTCCATCCAGCAAAGTGCATCGACGTG 193111 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | || || || ||| | ||||| |||||| ||||| ||||| || Sbjct 193110 ATCTTGCCCATGGTAGGCTCCTTCATGTGGATGTTCAACGACTGGGACTGGTCGATAAAG 193051 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTG 109587 |||||| || || ||||| |||||||| | || |||||||| ||||||||| Sbjct 193050 GCACCACGGTCGGCAGCCATCTCGATGATTCTGCGCTGCGAGATTTCCCAAACAGTCTTG 192991 Query 109588 TACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTC 109647 || | | |||| | |||||||| || | || | ||| || ||||| | Sbjct 192990 TAAAGCTCCTTGGTCTCATCGGGGATATTGGGAATTCGTGCAATGGAACCACCCTCGGCG 192931 Query 109648 ACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTCAACAAG- 109706 | ||| | | |||||| | | ||||| || || | | || || | | || Sbjct 192930 ATGATGCGGTTCTTCATGTTCTCAGACCACAGGCCCATGTCGACAAGGTCCTTGAGCAGC 192871 Query 109707 -ATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCG 109765 ||| ||||||||| || |||||||| || || || ||| ||||| | | Sbjct 192870 CATG--GGTTGACCACCTGGAACTCACCAGCGAGCACACGGCGAGAGTAAATGTTGGAAG 192813 Query 109766 TGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGG 109825 |||| || ||||| ||||| ||||| || || || || | ||||| || || ||||||| Sbjct 192812 TGTATGGCTCGAAGCACTCGTTGTTTCCGAGAATCTGCGAGGTGGAGGCAGTTGGCATGG 192753 Query 109826 GAGCCATGAGAAGACTGTTTCGGAGACC 109853 | || ||||| || ||| |||| ||| Sbjct 192752 GTGCGATGAGCAGCGAGTTGCGGACACC 192725 >seq296 Length=470551 Score = 104 bits (114), Expect = 3e-17 Identities = 329/505 (65%), Gaps = 19/505 (4%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATC-AAGAATATCGACACGGTTTGTAGC 11561 ||||| |||||||| || ||||| ||||| | || |||| | ||| | |||| || || Sbjct 20510 CGATCAAAACGACCAGGACGGAGAAGAGCCTTGTCCAAGAGT-TCGGGATGGTTGGTGGC 20452 Query 11562 GGCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTT 11621 ||| |||| | | |||||| | ||||||||| || | || ||||||| ||||| Sbjct 20451 GGCGATGAAGATGACGCCAGTGCTTTGGTCGAAACCATCAAGATCGTTGAGAAGTTGGTT 20392 Query 11622 GATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAAC--GCTTCTT--AC 11677 || || || || ||| | || | | || | | || | || || Sbjct 20391 GAGAGTTTGG----------CGGTGGTAGC--TAGCGTC-GCGGGAGTTGCGTTTTCCAC 20345 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 | |||||||| | ||| || ||||| | |||| ||| |||| ||| || || Sbjct 20344 CTACAGCGTCCAGCTCGTCAATGAAGATGATAGCAGGTGCCTTGGAACGAGCAGTAGAGA 20285 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | ||||| || || ||||| ||||||||||| ||| | | || |||| | | ||| Sbjct 20284 AGAGTTCGCGAACGCGCTTAGCTCCAACACCGACGTAGACTTCGTCGAATTCGGATCCAG 20225 Query 11798 AACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTAC 11857 | | | ||||||||| || || |||||| || ||||| || ||||| |||| Sbjct 20224 ACATGTAGAAGAAGGGAACGCCAGCTTCTCCAGCGCAAGCACGAGCAAGCAGAGTTTTAC 20165 Query 11858 CCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGT 11917 | ||||| || | ||| |||| ||| |||| ||||| | || |||| | || Sbjct 20164 CAGTACCGGGAGGGCCAACGAGGAGGACGCCCTTGGGGAGCCTGCCACCGAGTTTGTTGT 20105 Query 11918 AGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCGA 11977 | || || |||||||| ||||| || | || ||||| |||||||| |||| Sbjct 20104 ACTTGTCCGGGTTCTTGAGAAAGTCGACTACATCTAGGAGTTCTTCCTTGGCCTCGTCGC 20045 Query 11978 TACCCTCAACATCGGTGAAACGAGT 12002 ||| | || || |||| || || Sbjct 20044 AACCGTGCACGTCACTGAAGCGGGT 20020 >seq349 Length=241512 Score = 86.0 bits (94), Expect = 7e-12 Identities = 59/67 (88%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGTT 136776 ||||||||||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 64449 TAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGACCCTCGTA 64390 Query 136777 GGGAACA 136783 | || || Sbjct 64389 GTGACCA 64383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588972952049200