Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq171 107 2e-18 seq189 86.0 5e-12 >seq171 Length=1567143 Score = 107 bits (118), Expect = 2e-18 Identities = 188/271 (69%), Gaps = 2/271 (1%) Strand=Plus/Minus Query 30114 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT-GTACTCTGCTCCGA 30172 ||||||||| || ||| ||| ||| |||||| |||| || | ||||||||| |||| Sbjct 618398 CAGCTGATCGACGCCCTGGCCCTCGTAATCTGCCG-CATGCCCTTTGTACTCTGCGCCGA 618340 Query 30173 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30232 |||||| ||| ||||| ||||| || || ||||| || ||| || |||| || || Sbjct 618339 AATGCCGCCATTGGAAACCGTATACGGGGCCCAGCTCGCCCGTCTCGTAGTGCGAGAGGC 618280 Query 30233 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 30292 || |||| | | | || | | |||||| ||||||||||||| | |||| || | Sbjct 618279 CCACGCTGTCGAGATACTCGCGGCTGCCGTTGCCGTCCCAGATCTTGATCCCCGCGTCTG 618220 Query 30293 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30352 ||||| | || ||| || ||||||||| || ||||| | | ||||| Sbjct 618219 AGAGCGGCCCGCTGTGCGTGCTTCCGGCGACGAACCAGAGAAGCTCGCCGATTACGGCGC 618160 Query 30353 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30383 | || |||| ||| || ||||||||||| Sbjct 618159 GCAGGAATACCCGCTTCGTGGTGAGGAGGGG 618129 >seq189 Length=186598 Score = 86.0 bits (94), Expect = 5e-12 Identities = 130/180 (72%), Gaps = 4/180 (2%) Strand=Plus/Minus Query 52015 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52074 |||||||||| | |||||| ||| | ||| | || || |||||||||||||| Sbjct 82086 TCGTCAAGGTTCGTACAAGGACCACCAAGGTGCCACAAATCGGTGACAAGTTTGCGTCTC 82027 Query 52075 -TCACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTGAC-CCAGGAGGACATGCCCTTCGA 52132 |||||| |||||||| ||| || | ||| | |||||| |||||||||||| Sbjct 82026 GTCACGGT-CAAAAGGGTACGATTGGTATCA-CCTACCGCCAGGAAGACATGCCCTTCTC 81969 Query 52133 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCATCCAGGATGAC 52192 || ||| || | |||||| | |||||||||||||||||| |||| || | ||||| Sbjct 81968 CAGGGAAGGTCTCACACCCGACTTGATCATCAACCCCCACGCCATTCCCTCGCGTATGAC 81909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408615538268822