Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq393 269 5e-67
seq403 168 1e-36
>seq393
Length=255347
Score = 269 bits (298), Expect = 5e-67
Identities = 740/1120 (66%), Gaps = 49/1120 (4%)
Strand=Plus/Minus
Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTC---GGCCTGGGCGCAAGACTGCGTCAGG 221422
|| ||||| | |||||| ||||| ||||| ||| |||| ||| |||||
Sbjct 192624 CCCTCGTAGGTCTCGTAAGGACCA---AGTTCCTTGGCAATATCGCAGGACGAAGTCAGA 192568
Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482
|| ||||||||||||||||| |||||| ||||||| ||||||||| | || |
Sbjct 192567 GCGGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTGGCCTGGTTGGACTCG 192508
Query 221483 AAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGC 221542
||||||| ||||| | || | |||||||| |||||||| || ||||| || ||
Sbjct 192507 AAGGGCAGGCGCAGGGCGAGGAAAGCATCGGCCAGACCCTGTACACCCATACCAATAGGT 192448
Query 221543 CTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601
| ||| | |||| ||||| ||| || ||||| || |||||| || || |
Sbjct 192447 CGGTGGCGGAAGTTGCT-GCGGCGCGCCTCCTCAACGGGGTAGTGGTTGACCTCAATAAT 192389
Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661
||||| | ||| | |||| ||||| |||||| |||||| || || |
Sbjct 192388 CTTGTTCAAGTTGCGGGTGACGACTTGGGTAACCTCGTGCAGCTTTTGA------AAGTC 192335
Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721
|||||||||| | || | || ||||| | || || | ||||||||
Sbjct 192334 AAACTCGCCGCGCTTGTAG------TCGACAAATGAAGGCAGAGCGAGCGAAGCCAGGTT 192281
Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781
|| || || ||||| || || |||| | ||||| || ||||||||| ||
Sbjct 192280 GCAGACAGCGACCTCATCAGGAGCAGTGTACTCGACAATCTCGGTGCAGAGGTTGGAGCT 192221
Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841
||||| ||||||| || || || |||||| ||| ||| ||||||||||||||
Sbjct 192220 GCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTAGAGCAT 192161
Query 221842 AAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CGC 221900
|||||| |||||||| ||||||| | || || | ||| || | ||||| |||
Sbjct 192160 AAAGGGGTTACCAGTCTCAGTCTGAGCCTCAAGGATAGCATACCACAGCT-TCTGGGCGC 192102
Query 221901 TCACCGTCCTCTTGACTGCACCCTCGGT---CTTTTCATACCCGGTATAGAGCATGTCAA 221957
|||||| | | || ||| | | ||| || || | || ||| || |
Sbjct 192101 GAACCGTC----TCGCGGC--CCTTGTTTTGCTTCTCGTAGCTCTCGTACAGCGCTTCGA 192048
Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017
||| || ||||| | ||| | || || || ||| | ||| |||||||| |||| |
Sbjct 192047 ACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGTCCAAT 191988
Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077
||| |||| ||| | || |||||| | ||| || |||||||| || | |||||||
Sbjct 191987 CGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAAGAGAT 191928
Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137
| | || || ||||||| |||| ||| || | ||| |||| || |||| | |
Sbjct 191927 CGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAAGCCAAAGACAT 191868
Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197
|||||||||| ||||| || |||| ||| | || || || ||||||||||||||||| |
Sbjct 191867 CAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCCACCCTGGT 191808
Query 222198 CCACCATCCTCTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253
| | | | | || | |||| | | || || | || | || ||||| |||
Sbjct 191807 CGA----CGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTGAT 191752
Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC----AT 222309
||||||||||| |||||| | ||| ||| | || | | || ||| |
Sbjct 191751 GTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCAC---GGATTC-GGTGGACGTTGAG 191696
Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369
|| ||||| || ||| || ||||||| ||||| ||||||| ||||| ||||||
Sbjct 191695 ACCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCC 191636
Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT-TTGGTGG 222428
|| || ||| ||||| | || | || || || || |||||||| | | |||| |
Sbjct 191635 GTCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATGGT-G 191577
Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468
| ||||| ||||| || || |||||||||||||||
Sbjct 191576 TGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTA 191537
>seq403
Length=285126
Score = 168 bits (186), Expect = 1e-36
Identities = 318/471 (68%), Gaps = 17/471 (4%)
Strand=Plus/Minus
Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918
||| | | || |||| | | || || || || ||||| || || ||||| ||||| ||||
Sbjct 107861 AGAACTCCACCTTTGCCAACCGTCTTGTCGCGTTTGCCGCCGTTGAGGGTATCTTCTTCA 107802
Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978
||||||| || || ||||||||||| | ||| || || ||||||||| || ||
Sbjct 107801 GCGGTTCATTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGTCTTACCT 107742
Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038
| ||||||||||||||| | ||||||||| | |||| || ||||||||||||||||
Sbjct 107741 TCTCCAACGAGCTCATCTCTCGTGACGAGGGTATGCACACCGACTTTGCCTGCCTGCTCT 107682
Query 26039 ACACGGGCCACTTGCTCCACAA--ACCTTCTCAA-GAGACCGTCTACAGTATCATCAAAG 26095
| | | ||| |||| || ||| | | ||| | |||||||| |
Sbjct 107681 TCTC------TCTCCTCAACAACCGCCCCAGCAAGGCTGCTGTCGAGGCTATCATCACCG 107628
Query 26096 AGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCA 26155
| ||||| ||||| ||| ||||||| | | ||||
Sbjct 107627 AAGCTGTCGAGATTGAGCAGGAGTTCCTCAGCGACGCGCTTCCTTGCGCTCTTCTCGGCA 107568
Query 26156 TGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCA 26213
||||| || |||||| |||| |||||||||| || ||||||| |||||| |||
Sbjct 107567 TGAACGCCACTCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTGCTCCTTGC-- 107510
Query 26214 GCTGGGACTCGCCAGACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATA 26271
|| || | ||| ||||| |||| | ||||| |||||||| ||||| |||||
Sbjct 107509 TCTCGGCAACCCCAAGTACTACA--ACGCCACCAACCCCTTCGACTTCATGGAGAACATC 107452
Query 26272 TCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322
||| | | || |||||||||||||| || ||| | || || ||||| |||
Sbjct 107451 TCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAA 107401
Score = 107 bits (118), Expect = 4e-18
Identities = 177/255 (69%), Gaps = 3/255 (1%)
Strand=Plus/Minus
Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539
||| | |||||||||||||| | || |||||||||||| ||||||||||| ||
Sbjct 108291 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTCTCC 108232
Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT---AC 25596
|||||| | ||| |||| || | || || ||||| ||| ||| ||| | |
Sbjct 108231 AAGGACCTTCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTTTTCATCTCCCAT 108172
Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656
|| | || || || || ||||| ||||| || || |||||||| || ||| | |||
Sbjct 108171 GTCCTTGCCTTTTTCGCCGCCTCGGATGGCATTGTCAACGAGAACTTGGTCGAACGCTTC 108112
Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716
|||| ||||| || ||||| || ||||||||||||||||| || ||
Sbjct 108111 TCCAGCGAAGTACAAATTCCCGAGGCGCGCTGCTTCTACGGTTTCCAGATCATGATGGAG 108052
Query 25717 AATGTGCACTCTGAG 25731
|| || |||||||||
Sbjct 108051 AACGTCCACTCTGAG 108037
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928839993228160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |