Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq393 269 5e-67 seq403 168 1e-36 >seq393 Length=255347 Score = 269 bits (298), Expect = 5e-67 Identities = 740/1120 (66%), Gaps = 49/1120 (4%) Strand=Plus/Minus Query 221366 CCATCGTACGACTCGTAGGGACCGTACAGTTC---GGCCTGGGCGCAAGACTGCGTCAGG 221422 || ||||| | |||||| ||||| ||||| ||| |||| ||| ||||| Sbjct 192624 CCCTCGTAGGTCTCGTAAGGACCA---AGTTCCTTGGCAATATCGCAGGACGAAGTCAGA 192568 Query 221423 GCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAAGTG 221482 || ||||||||||||||||| |||||| ||||||| ||||||||| | || | Sbjct 192567 GCGGCGTGGTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTGGCCTGGTTGGACTCG 192508 Query 221483 AAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATGGGC 221542 ||||||| ||||| | || | |||||||| |||||||| || ||||| || || Sbjct 192507 AAGGGCAGGCGCAGGGCGAGGAAAGCATCGGCCAGACCCTGTACACCCATACCAATAGGT 192448 Query 221543 CTGTGTCTCCTGTTGGAAGCGGC-CGCTTCTGGCACGGGATAAAAGTTGACGTCGATCAG 221601 | ||| | |||| ||||| ||| || ||||| || |||||| || || | Sbjct 192447 CGGTGGCGGAAGTTGCT-GCGGCGCGCCTCCTCAACGGGGTAGTGGTTGACCTCAATAAT 192389 Query 221602 ATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAACAC 221661 ||||| | ||| | |||| ||||| |||||| |||||| || || | Sbjct 192388 CTTGTTCAAGTTGCGGGTGACGACTTGGGTAACCTCGTGCAGCTTTTGA------AAGTC 192335 Query 221662 CAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGGTT 221721 |||||||||| | || | || ||||| | || || | |||||||| Sbjct 192334 AAACTCGCCGCGCTTGTAG------TCGACAAATGAAGGCAGAGCGAGCGAAGCCAGGTT 192281 Query 221722 ACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAGGTTGCTGCA 221781 || || || ||||| || || |||| | ||||| || ||||||||| || Sbjct 192280 GCAGACAGCGACCTCATCAGGAGCAGTGTACTCGACAATCTCGGTGCAGAGGTTGGAGCT 192221 Query 221782 CTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGAGCAT 221841 ||||| ||||||| || || || |||||| ||| ||| |||||||||||||| Sbjct 192220 GCGAATGGTGCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTAGAGCAT 192161 Query 221842 AAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTCTCTGG-CGC 221900 |||||| |||||||| ||||||| | || || | ||| || | ||||| ||| Sbjct 192160 AAAGGGGTTACCAGTCTCAGTCTGAGCCTCAAGGATAGCATACCACAGCT-TCTGGGCGC 192102 Query 221901 TCACCGTCCTCTTGACTGCACCCTCGGT---CTTTTCATACCCGGTATAGAGCATGTCAA 221957 |||||| | | || ||| | | ||| || || | || ||| || | Sbjct 192101 GAACCGTC----TCGCGGC--CCTTGTTTTGCTTCTCGTAGCTCTCGTACAGCGCTTCGA 192048 Query 221958 ACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGT 222017 ||| || ||||| | ||| | || || || ||| | ||| |||||||| |||| | Sbjct 192047 ACTCGTCGCCGTAGACATCGGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGTCCAAT 191988 Query 222018 GCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGAT 222077 ||| |||| ||| | || |||||| | ||| || |||||||| || | ||||||| Sbjct 191987 CGCCGTTCTCTTGGACACGCTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAAGAGAT 191928 Query 222078 CTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGT 222137 | | || || ||||||| |||| ||| || | ||| |||| || |||| | | Sbjct 191927 CGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCAGGTCCAGGAAGCCAAAGACAT 191868 Query 222138 CAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGAT 222197 |||||||||| ||||| || |||| ||| | || || || ||||||||||||||||| | Sbjct 191867 CAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTGGGCGCTTGTTGCCACCCTGGT 191808 Query 222198 CCACCATCCTCTCCAGAG----CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGAT 222253 | | | | | || | |||| | | || || | || | || ||||| ||| Sbjct 191807 CGA----CGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTGAT 191752 Query 222254 CGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTGGCAGAC----AT 222309 ||||||||||| |||||| | ||| ||| | || | | || ||| | Sbjct 191751 GTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCAC---GGATTC-GGTGGACGTTGAG 191696 Query 222310 GCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCC 222369 || ||||| || ||| || ||||||| ||||| ||||||| ||||| |||||| Sbjct 191695 ACCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCC 191636 Query 222370 CTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGAT-TTGGTGG 222428 || || ||| ||||| | || | || || || || |||||||| | | |||| | Sbjct 191635 GTCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTGGGGTGATGGT-G 191577 Query 222429 AACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTA 222468 | ||||| ||||| || || ||||||||||||||| Sbjct 191576 TGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTA 191537 >seq403 Length=285126 Score = 168 bits (186), Expect = 1e-36 Identities = 318/471 (68%), Gaps = 17/471 (4%) Strand=Plus/Minus Query 25859 AGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCA 25918 ||| | | || |||| | | || || || || ||||| || || ||||| ||||| |||| Sbjct 107861 AGAACTCCACCTTTGCCAACCGTCTTGTCGCGTTTGCCGCCGTTGAGGGTATCTTCTTCA 107802 Query 25919 GCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACT 25978 ||||||| || || ||||||||||| | ||| || || ||||||||| || || Sbjct 107801 GCGGTTCATTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGTCTTACCT 107742 Query 25979 TTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCT 26038 | ||||||||||||||| | ||||||||| | |||| || |||||||||||||||| Sbjct 107741 TCTCCAACGAGCTCATCTCTCGTGACGAGGGTATGCACACCGACTTTGCCTGCCTGCTCT 107682 Query 26039 ACACGGGCCACTTGCTCCACAA--ACCTTCTCAA-GAGACCGTCTACAGTATCATCAAAG 26095 | | | ||| |||| || ||| | | ||| | |||||||| | Sbjct 107681 TCTC------TCTCCTCAACAACCGCCCCAGCAAGGCTGCTGTCGAGGCTATCATCACCG 107628 Query 26096 AGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCA 26155 | ||||| ||||| ||| ||||||| | | |||| Sbjct 107627 AAGCTGTCGAGATTGAGCAGGAGTTCCTCAGCGACGCGCTTCCTTGCGCTCTTCTCGGCA 107568 Query 26156 TGAACAACAGACTCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCT--GTGCCA 26213 ||||| || |||||| |||| |||||||||| || ||||||| |||||| ||| Sbjct 107567 TGAACGCCACTCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTGCTCCTTGC-- 107510 Query 26214 GCTGGGACTCGCCAGACTCTACAGTACGC--CTAACCCGTTCGACTTTATGGAAAACATA 26271 || || | ||| ||||| |||| | ||||| |||||||| ||||| ||||| Sbjct 107509 TCTCGGCAACCCCAAGTACTACA--ACGCCACCAACCCCTTCGACTTCATGGAGAACATC 107452 Query 26272 TCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGGTCGGCGACTATCAA 26322 ||| | | || |||||||||||||| || ||| | || || ||||| ||| Sbjct 107451 TCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAA 107401 Score = 107 bits (118), Expect = 4e-18 Identities = 177/255 (69%), Gaps = 3/255 (1%) Strand=Plus/Minus Query 25480 TGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTGGCC 25539 ||| | |||||||||||||| | || |||||||||||| ||||||||||| || Sbjct 108291 TGGCAAATGTACAAGAAGGCCGAGGCTTCTTTCTGGACCGCCGAGGAGATTGATCTCTCC 108232 Query 25540 AAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT---AC 25596 |||||| | ||| |||| || | || || ||||| ||| ||| ||| | | Sbjct 108231 AAGGACCTTCACGACTGGAACAAGCGATTGAACGACGACGAGCGCTTTTTCATCTCCCAT 108172 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 || | || || || || ||||| ||||| || || |||||||| || ||| | ||| Sbjct 108171 GTCCTTGCCTTTTTCGCCGCCTCGGATGGCATTGTCAACGAGAACTTGGTCGAACGCTTC 108112 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 |||| ||||| || ||||| || ||||||||||||||||| || || Sbjct 108111 TCCAGCGAAGTACAAATTCCCGAGGCGCGCTGCTTCTACGGTTTCCAGATCATGATGGAG 108052 Query 25717 AATGTGCACTCTGAG 25731 || || ||||||||| Sbjct 108051 AACGTCCACTCTGAG 108037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928839993228160