Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq283 107 6e-18
seq373 104 7e-17
seq189 91.5 4e-13
>seq283
Length=372480
Score = 107 bits (118), Expect = 6e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 353938 TCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGA 353997
||||||||||| ||| | |||||| | |||||| || || || ||||| ||
Sbjct 228325 TCGGGGCAGAGAGCACCAACGAATTCTTCGTTATGAGAAATCATGATGACACCTCCCTTG 228266
Query 353998 TAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGT 354057
||| ||| || ||||||| ||||||||||||||||||| | ||| ||||| ||
Sbjct 228265 TAGTCGCGAATAGCGACGGCGAGACCACCAAGCGAGTCACGGTCCAAGAAGTTAGTGGGC 228206
Query 354058 TCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACC 354117
||||| | || || | ||||| | ||||||| || |||| || || ||||| |||
Sbjct 228205 TCGTCCAAGACGAGGAGATGCGGGTTGTTCCACATGGCACCAGCAAGTACAACCTTGACC 228146
Query 354118 TTCTGTCCGCCTGATAG 354134
|||||||| || || ||
Sbjct 228145 TTCTGTCCACCGGAGAG 228129
>seq373
Length=382463
Score = 104 bits (114), Expect = 7e-17
Identities = 167/240 (70%), Gaps = 0/240 (0%)
Strand=Plus/Plus
Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624
||| | |||||| | ||||| |||||||| ||||| || || ||| | ||| ||
Sbjct 186150 CATGACGTCTTCGAGCGCCTTGACCAAACGACGTTGAATGTATCCGGTTTCGGCTGTCTT 186209
Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684
|| |||||||| || | ||| |||||||| |||| || |||||||| | || ||
Sbjct 186210 GACCGCTGTATCGATCAAACCCTCACGACCAGCCATGGCGTGGAAGAAGAATTCGGATGG 186269
Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744
|| || | || | ||| |||| ||||||||||| | || ||||| | |||
Sbjct 186270 AGTGAGACCACGAAGGTAAGAGTTCTCGACGAAACCACGAGATTCTGGCGAGTAGTCATC 186329
Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804
||||| || || |||||||| | || || | || ||||| ||||||| ||| || ||
Sbjct 186330 CTTGGAGAAATGCGGCAGGGTTCGGTACTTGAATCCATATGGAATACGCTGTCCTTCCAC 186389
>seq189
Length=186598
Score = 91.5 bits (100), Expect = 4e-13
Identities = 113/152 (74%), Gaps = 6/152 (4%)
Strand=Plus/Plus
Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898
|||||||| |||||||| |||||| || ||||| |||||||| | ||||||| | ||
Sbjct 81900 TGGGCGATTGTCATACGCGAGGGAATGGCGTGGGGGTTGATGATCAAGTCGGGTGTGAGA 81959
Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TGTTTCCAATAGTTCCCTTT 251955
|| || | ||||||||| || ||||| | || || | ||||| || ||||||
Sbjct 81960 CCTTCCCTGGAGAAGGGCATGTC---TTCCTGGCGGTAGGTGATACCAATCGTACCCTTT 82016
Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987
|| ||||||||||| ||||| ||||| ||
Sbjct 82017 TGACCGTGACGAGACGCAAACTTGTCACCGAT 82048
Score = 89.7 bits (98), Expect = 2e-12
Identities = 169/249 (68%), Gaps = 0/249 (0%)
Strand=Plus/Plus
Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471
|||||| ||| |||||||| || | || || || || || | | || || ||||
Sbjct 81473 ACCACAAATATCGCACACATGCACCGTATACGCGTCTGAAACGGTAAAAAGGCGTTCCTT 81532
Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531
||| | ||||| || | |||||| |||||||| ||||| |||||||| || ||
Sbjct 81533 CAAAAAGGCCGCAGCACCATGCGCAATCATGCAATCACGTTCCATCTCACCGAAGCGGAG 81592
Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGAT 251591
|||||| || | || | ||||||| | ||||| || |||||| | | |||||
Sbjct 81593 ACCACCGTCCCTGGCACGACCCTCGACGGGCTGGCGGGTGAGAATCTGGAGCGGACCACG 81652
Query 251592 GGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651
|| || || |||||| | |||||||| ||||||||||| | | ||| ||
Sbjct 81653 GGCACGAGCGTGAATCTTATCGTCGACCATATGGCGCAGACGCTGGTAATACGTGGGCCC 81712
Query 251652 GATGAAGAT 251660
| ||||||
Sbjct 81713 CAAGAAGAT 81721
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471809792927518
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |