Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq283 107 6e-18 seq373 104 7e-17 seq189 91.5 4e-13 >seq283 Length=372480 Score = 107 bits (118), Expect = 6e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 353938 TCGGGGCAGAGTGCAGAATAGAATTCCCGCTGATGAGATATAATAATCACACCCCCAAGA 353997 ||||||||||| ||| | |||||| | |||||| || || || ||||| || Sbjct 228325 TCGGGGCAGAGAGCACCAACGAATTCTTCGTTATGAGAAATCATGATGACACCTCCCTTG 228266 Query 353998 TAGCTCTTAATTGCTGTGGCGAGAGCACCAAGCGAGTCACGGTCGAGGAAATTAGTAGGT 354057 ||| ||| || ||||||| ||||||||||||||||||| | ||| ||||| || Sbjct 228265 TAGTCGCGAATAGCGACGGCGAGACCACCAAGCGAGTCACGGTCCAAGAAGTTAGTGGGC 228206 Query 354058 TCGTCAAGGATAAGAACGTGCGGCTCCATCCACATTGCTGCAGCCAGAACTACCTTAACC 354117 ||||| | || || | ||||| | ||||||| || |||| || || ||||| ||| Sbjct 228205 TCGTCCAAGACGAGGAGATGCGGGTTGTTCCACATGGCACCAGCAAGTACAACCTTGACC 228146 Query 354118 TTCTGTCCGCCTGATAG 354134 |||||||| || || || Sbjct 228145 TTCTGTCCACCGGAGAG 228129 >seq373 Length=382463 Score = 104 bits (114), Expect = 7e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| | |||||| | ||||| |||||||| ||||| || || ||| | ||| || Sbjct 186150 CATGACGTCTTCGAGCGCCTTGACCAAACGACGTTGAATGTATCCGGTTTCGGCTGTCTT 186209 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 || |||||||| || | ||| |||||||| |||| || |||||||| | || || Sbjct 186210 GACCGCTGTATCGATCAAACCCTCACGACCAGCCATGGCGTGGAAGAAGAATTCGGATGG 186269 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 || || | || | ||| |||| ||||||||||| | || ||||| | ||| Sbjct 186270 AGTGAGACCACGAAGGTAAGAGTTCTCGACGAAACCACGAGATTCTGGCGAGTAGTCATC 186329 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAAC 302804 ||||| || || |||||||| | || || | || ||||| ||||||| ||| || || Sbjct 186330 CTTGGAGAAATGCGGCAGGGTTCGGTACTTGAATCCATATGGAATACGCTGTCCTTCCAC 186389 >seq189 Length=186598 Score = 91.5 bits (100), Expect = 4e-13 Identities = 113/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Plus Query 251839 TGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGT 251898 |||||||| |||||||| |||||| || ||||| |||||||| | ||||||| | || Sbjct 81900 TGGGCGATTGTCATACGCGAGGGAATGGCGTGGGGGTTGATGATCAAGTCGGGTGTGAGA 81959 Query 251899 CCATCAGCAGTGAAGGGCATATCCTTTTCCT--CAATAA-TGTTTCCAATAGTTCCCTTT 251955 || || | ||||||||| || ||||| | || || | ||||| || |||||| Sbjct 81960 CCTTCCCTGGAGAAGGGCATGTC---TTCCTGGCGGTAGGTGATACCAATCGTACCCTTT 82016 Query 251956 TGTCCGTGACGAGAACTGAACTTATCACCAAT 251987 || ||||||||||| ||||| ||||| || Sbjct 82017 TGACCGTGACGAGACGCAAACTTGTCACCGAT 82048 Score = 89.7 bits (98), Expect = 2e-12 Identities = 169/249 (68%), Gaps = 0/249 (0%) Strand=Plus/Plus Query 251412 ACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTT 251471 |||||| ||| |||||||| || | || || || || || | | || || |||| Sbjct 81473 ACCACAAATATCGCACACATGCACCGTATACGCGTCTGAAACGGTAAAAAGGCGTTCCTT 81532 Query 251472 GGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAG 251531 ||| | ||||| || | |||||| |||||||| ||||| |||||||| || || Sbjct 81533 CAAAAAGGCCGCAGCACCATGCGCAATCATGCAATCACGTTCCATCTCACCGAAGCGGAG 81592 Query 251532 ACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGAT 251591 |||||| || | || | ||||||| | ||||| || |||||| | | ||||| Sbjct 81593 ACCACCGTCCCTGGCACGACCCTCGACGGGCTGGCGGGTGAGAATCTGGAGCGGACCACG 81652 Query 251592 GGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651 || || || |||||| | |||||||| ||||||||||| | | ||| || Sbjct 81653 GGCACGAGCGTGAATCTTATCGTCGACCATATGGCGCAGACGCTGGTAATACGTGGGCCC 81712 Query 251652 GATGAAGAT 251660 | |||||| Sbjct 81713 CAAGAAGAT 81721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471809792927518