Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq403 170 2e-36
seq276 170 2e-36
seq393 152 6e-31
seq278 114 2e-19
seq171 114 2e-19
>seq403
Length=285126
Score = 170 bits (188), Expect = 2e-36
Identities = 236/325 (73%), Gaps = 13/325 (4%)
Strand=Plus/Plus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| ||| || || || ||| |||||| |||||||||||||| | ||||||||
Sbjct 107396 GCCTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATG 107455
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
|||||| | ||| ||||||| | ||||||| ||| | ||||| | |
Sbjct 107456 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGGGGTTGCCGAGAGCAAGG 107515
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868
||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| ||
Sbjct 107516 AGCAGACGGTCGGCGACGAACTCAATGTACTGGCACATGAGAGTGGCGTTCATGCCGAGA 107575
Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928
|||||| | || |||| ||||| | ||||| | ||| |||||||| || ||| ||
Sbjct 107576 AGAGCGCAA--GGAAGCGCGTCGCTGAGGAACTCCTGCTCAATCTCGACAGCTTCGGTGA 107633
Query 868929 TGATCTGCCTGGGCA----CGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGG 868984
|||| |||| | || | | | | | | ||||||| ||| | | ||||||||
Sbjct 107634 TGAT-AGCCTCGACAGCAGCCTTGCTGGGGCGGTTGTTGAGGAG---AGAGAAGAGCAGG 107689
Query 868985 CAGGCAAAGTCGCAGTGCA-ACCCT 869008
|||||||||||| ||||| |||||
Sbjct 107690 CAGGCAAAGTCGGTGTGCATACCCT 107714
Score = 93.3 bits (102), Expect = 5e-13
Identities = 126/174 (72%), Gaps = 4/174 (2%)
Strand=Plus/Plus
Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209
||||| | ||||||| || | ||| ||| ||||| ||| ||| | ||||||
Sbjct 107685 GCAGGCA-GGCAAAGTCGG---TGTGCATACCCTCGTCACGAGAGATGAGCTCGTTGGAG 107740
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269
|||| || ||||||||||| || |||||||| | ||| ||||||| | ||| ||
Sbjct 107741 AAGGTAAGACCGGGCATGAGACCACGCTTCTTCAACCAGAAGATGGAGGCGAATGAACCG 107800
Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTG 869323
||| ||||| ||||| ||||||||||| ||| || || | ||||||||||
Sbjct 107801 CTGAAGAAGATACCCTCAACGGCGGCAAACGCGACAAGACGGTTGGCAAAGGTG 107854
>seq276
Length=361267
Score = 170 bits (188), Expect = 2e-36
Identities = 142/171 (83%), Gaps = 2/171 (1%)
Strand=Plus/Minus
Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189
||||||| || |||| ||| | ||||| || | ||||| ||| | ||||||||||
Sbjct 258004 GTGGGACCAGAAGTTCATGC-AGGTCGACCAAGAGATGCTCTTCGAGATCATCCTCGCCG 257946
Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249
|||||||||||||||||||| | |||||||| | || |||||| |||| ||||||||||
Sbjct 257945 CCAACTACCTCGACATCAAGGCCCTGCTCGACGTGGGCTGCAAGACTGTCGCCAACATGA 257886
Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300
||||||||||||||||||| |||||||||||||| || |||||| || |||
Sbjct 257885 TCAAGGGCAAGTCGCCCGACGAGATCCGCAAGACGTTCAACATCCAGAACG 257835
>seq393
Length=255347
Score = 152 bits (168), Expect = 6e-31
Identities = 216/301 (72%), Gaps = 2/301 (1%)
Strand=Plus/Minus
Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124
||||||||||||||| || |||| ||| | || ||||||||||| | ||| ||||| ||
Sbjct 191812 CTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTGA 191753
Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184
||||||||||| | | ||||| ||||| ||| || | ||| || | ||
Sbjct 191752 TGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGATTCGGTGGACGTTGAGACC 191693
Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244
|| ||||| || | ||||||||| | ||||| ||||| |||||||||||||| ||
Sbjct 191692 AATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCGTC 191633
Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTG-CGCCGTGC 1630303
||| ||| |||||||||| | ||| ||||| || || | || ||||| | ||||
Sbjct 191632 GATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTG-GGGTGATGGTGTGC 191574
Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363
| |||||||| || || |||| || || || ||| |||||||| |||||| |
Sbjct 191573 CTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAGTCGTAAG 191514
Query 1630364 T 1630364
|
Sbjct 191513 T 191513
Score = 93.3 bits (102), Expect = 5e-13
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524
||||||| ||||| ||||| ||||| || || ||||||||| ||||||||||| |
Sbjct 191948 TCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCA 191889
Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584
|||| || || | | | || |||||||| ||||| |||||| ||||||||| ||
Sbjct 191888 GGTCCAGGAAGCCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTG 191829
Query 1628585 TGCGCTTGCCGCCGCC 1628600
||||||| ||| ||
Sbjct 191828 GGCGCTTGTTGCCACC 191813
Score = 87.8 bits (96), Expect = 2e-11
Identities = 133/184 (72%), Gaps = 4/184 (2%)
Strand=Plus/Minus
Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392
|||||||||| || || || | |||||| ||||| | ||| |||||| ||| |||
Sbjct 192866 GGTTGACCACCTGGAACTCACCAGCGAGCACACGGCGAGAGTAAATGTTGGAAGTGTATG 192807
Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452
| ||| | |||| |||| || || |||||||| || | ||| || |||||| | ||
Sbjct 192806 GC-TCGAAGCACTCGTTGTTTCCGAGAATCTGCGAGGTGGAGGCAGTTGGCATGGGTGCG 192748
Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511
| ||| ||||||||||| | ||||||| | | | || | || ||| | ||||||||
Sbjct 192747 ATGAGCAGCGAGTTGCGGACACCGTGCTGGGCAATCTTG-GCCTTGAGCTCATCCCAGTC 192689
Query 1627512 CCAG 1627515
||||
Sbjct 192688 CCAG 192685
>seq278
Length=203197
Score = 114 bits (126), Expect = 2e-19
Identities = 151/207 (73%), Gaps = 3/207 (1%)
Strand=Plus/Minus
Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103
||||||||||| ||| ||| |||||||||||| |||| || || || || || || |
Sbjct 35439 CGATCTTGGAGTCGGGGTCGGAGGCGCTCATCTTTCCGCCCT--GT-AGACCGGGAACCA 35383
Query 1852104 GCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAA 1852163
||||| | ||||||| ||| | | ||||||| |||| | ||| || |
Sbjct 35382 TGGGGTTCATCAGGTGGGCGCGTTCCTTGTAGCCGATCTTGGGCAAGACGTCCTTTGCGA 35323
Query 1852164 AGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCT 1852223
||| || |||||||||||||| || || || || |||| || ||||||| |||||
Sbjct 35322 GGGCGAAGATCTTGCGCTGGTCAACACCACCGAATTGAACGTCTACATCGAGGTACTGCT 35263
Query 1852224 CGTCGAGGGCCTGCATGAGCGGGTAGA 1852250
|||| || || ||||||||||||||||
Sbjct 35262 CGTCAAGCGCTTGCATGAGCGGGTAGA 35236
>seq171
Length=1567143
Score = 114 bits (126), Expect = 2e-19
Identities = 108/138 (78%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106
||||||||||||||||| ||||| ||||| | ||| ||| | || || || |||
Sbjct 1533461 GACAGCATCGGCGGCACAGTGACTTGCGTTATAAGGAACTGCCCGACGGGTCTGGGAGAG 1533520
Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166
|||||||| |||||| | ||||| ||| | |||||||||||||| ||||| || |||
Sbjct 1533521 CCGTGCTTCGACAAGCTGGAGGCTAAGCTGGGGCACGCCATGCTGTCTATCCCAGCGACC 1533580
Query 19167 AAGGGATTCGAGATTGGC 19184
||||| |||||||| |||
Sbjct 1533581 AAGGGTTTCGAGATCGGC 1533598
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107105225221238
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |