Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq403 170 2e-36 seq276 170 2e-36 seq393 152 6e-31 seq278 114 2e-19 seq171 114 2e-19 >seq403 Length=285126 Score = 170 bits (188), Expect = 2e-36 Identities = 236/325 (73%), Gaps = 13/325 (4%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| || || || ||| |||||| |||||||||||||| | |||||||| Sbjct 107396 GCCTTTTGGTAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCAGCAAGCGAGATG 107455 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | ||||||| ||| | ||||| | | Sbjct 107456 TTCTCCATGAAGTCGAAGGGGTTGGTGGCGTTGTAGTACTTGGGGTTGCCGAGAGCAAGG 107515 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCC--GA 868868 ||||| ||||||||||| ||||| ||||||||||||||||| |||||||||||| || Sbjct 107516 AGCAGACGGTCGGCGACGAACTCAATGTACTGGCACATGAGAGTGGCGTTCATGCCGAGA 107575 Query 868869 TGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGA 868928 |||||| | || |||| ||||| | ||||| | ||| |||||||| || ||| || Sbjct 107576 AGAGCGCAA--GGAAGCGCGTCGCTGAGGAACTCCTGCTCAATCTCGACAGCTTCGGTGA 107633 Query 868929 TGATCTGCCTGGGCA----CGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGG 868984 |||| |||| | || | | | | | | ||||||| ||| | | |||||||| Sbjct 107634 TGAT-AGCCTCGACAGCAGCCTTGCTGGGGCGGTTGTTGAGGAG---AGAGAAGAGCAGG 107689 Query 868985 CAGGCAAAGTCGCAGTGCA-ACCCT 869008 |||||||||||| ||||| ||||| Sbjct 107690 CAGGCAAAGTCGGTGTGCATACCCT 107714 Score = 93.3 bits (102), Expect = 5e-13 Identities = 126/174 (72%), Gaps = 4/174 (2%) Strand=Plus/Plus Query 869150 GCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTA 869209 ||||| | ||||||| || | ||| ||| ||||| ||| ||| | |||||| Sbjct 107685 GCAGGCA-GGCAAAGTCGG---TGTGCATACCCTCGTCACGAGAGATGAGCTCGTTGGAG 107740 Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| || ||||||||||| || |||||||| | ||| ||||||| | ||| || Sbjct 107741 AAGGTAAGACCGGGCATGAGACCACGCTTCTTCAACCAGAAGATGGAGGCGAATGAACCG 107800 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTG 869323 ||| ||||| ||||| ||||||||||| ||| || || | |||||||||| Sbjct 107801 CTGAAGAAGATACCCTCAACGGCGGCAAACGCGACAAGACGGTTGGCAAAGGTG 107854 >seq276 Length=361267 Score = 170 bits (188), Expect = 2e-36 Identities = 142/171 (83%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 1592131 GTGGGACAAGGAGTTT-TGCGACGTCGAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCG 1592189 ||||||| || |||| ||| | ||||| || | ||||| ||| | |||||||||| Sbjct 258004 GTGGGACCAGAAGTTCATGC-AGGTCGACCAAGAGATGCTCTTCGAGATCATCCTCGCCG 257946 Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 |||||||||||||||||||| | |||||||| | || |||||| |||| |||||||||| Sbjct 257945 CCAACTACCTCGACATCAAGGCCCTGCTCGACGTGGGCTGCAAGACTGTCGCCAACATGA 257886 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||||| |||||||||||||| || |||||| || ||| Sbjct 257885 TCAAGGGCAAGTCGCCCGACGAGATCCGCAAGACGTTCAACATCCAGAACG 257835 >seq393 Length=255347 Score = 152 bits (168), Expect = 6e-31 Identities = 216/301 (72%), Gaps = 2/301 (1%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||||||||||||||| || |||| ||| | || ||||||||||| | ||| ||||| || Sbjct 191812 CTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGAGCATGGGAATGAGACCGTTTGA 191753 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||||||||| | | ||||| ||||| ||| || | ||| || | || Sbjct 191752 TGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTGGCACGGATTCGGTGGACGTTGAGACC 191693 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || ||||| || | ||||||||| | ||||| ||||| |||||||||||||| || Sbjct 191692 AATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCGTC 191633 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTG-CGCCGTGC 1630303 ||| ||| |||||||||| | ||| ||||| || || | || ||||| | |||| Sbjct 191632 GATGCTGTCTTCCTTCATGTCGATGAGGAAGCAGGAGGACATCTG-GGGTGATGGTGTGC 191574 Query 1630304 CGGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGG 1630363 | |||||||| || || |||| || || || ||| |||||||| |||||| | Sbjct 191573 CTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAGTACTTTTGCGACATGTAGTCGTAAG 191514 Query 1630364 T 1630364 | Sbjct 191513 T 191513 Score = 93.3 bits (102), Expect = 5e-13 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 1628465 TCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGA 1628524 ||||||| ||||| ||||| ||||| || || ||||||||| ||||||||||| | Sbjct 191948 TCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCTTGCGCA 191889 Query 1628525 GGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCT 1628584 |||| || || | | | || |||||||| ||||| |||||| ||||||||| || Sbjct 191888 GGTCCAGGAAGCCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGGCACCTG 191829 Query 1628585 TGCGCTTGCCGCCGCC 1628600 ||||||| ||| || Sbjct 191828 GGCGCTTGTTGCCACC 191813 Score = 87.8 bits (96), Expect = 2e-11 Identities = 133/184 (72%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 1627334 GGTTGACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTG-ATG 1627392 |||||||||| || || || | |||||| ||||| | ||| |||||| ||| ||| Sbjct 192866 GGTTGACCACCTGGAACTCACCAGCGAGCACACGGCGAGAGTAAATGTTGGAAGTGTATG 192807 Query 1627393 ACCTCGCACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCC 1627452 | ||| | |||| |||| || || |||||||| || | ||| || |||||| | || Sbjct 192806 GC-TCGAAGCACTCGTTGTTTCCGAGAATCTGCGAGGTGGAGGCAGTTGGCATGGGTGCG 192748 Query 1627453 ACGAGGAGCGAGTTGCGCAGGCCGTGCT-GTCGAACTAGCGCGCGCAGCGCGTCCCAGTC 1627511 | ||| ||||||||||| | ||||||| | | | || | || ||| | |||||||| Sbjct 192747 ATGAGCAGCGAGTTGCGGACACCGTGCTGGGCAATCTTG-GCCTTGAGCTCATCCCAGTC 192689 Query 1627512 CCAG 1627515 |||| Sbjct 192688 CCAG 192685 >seq278 Length=203197 Score = 114 bits (126), Expect = 2e-19 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103 ||||||||||| ||| ||| |||||||||||| |||| || || || || || || | Sbjct 35439 CGATCTTGGAGTCGGGGTCGGAGGCGCTCATCTTTCCGCCCT--GT-AGACCGGGAACCA 35383 Query 1852104 GCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAA 1852163 ||||| | ||||||| ||| | | ||||||| |||| | ||| || | Sbjct 35382 TGGGGTTCATCAGGTGGGCGCGTTCCTTGTAGCCGATCTTGGGCAAGACGTCCTTTGCGA 35323 Query 1852164 AGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCT 1852223 ||| || |||||||||||||| || || || || |||| || ||||||| ||||| Sbjct 35322 GGGCGAAGATCTTGCGCTGGTCAACACCACCGAATTGAACGTCTACATCGAGGTACTGCT 35263 Query 1852224 CGTCGAGGGCCTGCATGAGCGGGTAGA 1852250 |||| || || |||||||||||||||| Sbjct 35262 CGTCAAGCGCTTGCATGAGCGGGTAGA 35236 >seq171 Length=1567143 Score = 114 bits (126), Expect = 2e-19 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 19047 GACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCGAG 19106 ||||||||||||||||| ||||| ||||| | ||| ||| | || || || ||| Sbjct 1533461 GACAGCATCGGCGGCACAGTGACTTGCGTTATAAGGAACTGCCCGACGGGTCTGGGAGAG 1533520 Query 19107 CCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCACC 19166 |||||||| |||||| | ||||| ||| | |||||||||||||| ||||| || ||| Sbjct 1533521 CCGTGCTTCGACAAGCTGGAGGCTAAGCTGGGGCACGCCATGCTGTCTATCCCAGCGACC 1533580 Query 19167 AAGGGATTCGAGATTGGC 19184 ||||| |||||||| ||| Sbjct 1533581 AAGGGTTTCGAGATCGGC 1533598 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107105225221238