Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq393 165 7e-36
seq225 104 2e-17
seq178 91.5 1e-13
>seq393
Length=255347
Score = 165 bits (182), Expect = 7e-36
Identities = 429/645 (67%), Gaps = 13/645 (2%)
Strand=Plus/Minus
Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGAC 139360
|||||| | ||||| || | ||||| |||| | |||||| | || | |||| | | |
Sbjct 192073 CTCGTAGCTCTCGTACAGCGCTTCGAACTCGT-CGCCGTAGACATCGGCAAGACCAGGGC 192015
Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420
||| || || ||||| || | ||| |||||||| | | ||| ||| ||||||||| |
Sbjct 192014 ACTCGTTGGGGCACATCAGGGTCCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGT 191955
Query 139421 CCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTAC 139480
| |||||||||| |||| | | | |||||| || || ||| || |||
Sbjct 191954 CGGGAATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCT 191895
Query 139481 GTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTG 139540
|| || ||||| |||| || |||||||||||||| || || |||||||| | |
Sbjct 191894 TGCGCAGGTCCAGGAAGCCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGG 191835
Query 139541 CGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCA 139597
| ||| || ||| ||||| || ||||||| || | | || ||| |||| || |
Sbjct 191834 CACCTGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGA 191775
Query 139598 ACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGTTGCGAG 139654
||| || |||||| | | |||||||||||||| | ||| ||| | | || |
Sbjct 191774 GCATGGGAATGAGACCGTTTGATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTG---G 191718
Query 139655 CTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA- 139713
| |||| || || |||| || || ||||| | ||||| || ||| |||||
Sbjct 191717 CACGGATTCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAG 191658
Query 139714 TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCAT 139773
|| | | ||| ||||| || || |||||||| |||| ||| || || |||||
Sbjct 191657 TCTTG-AGTGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAG 191599
Query 139774 GACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC 139833
|| || | || ||| | ||||| || ||||| || || ||||| || ||
Sbjct 191598 GAGGACATCTGGGGTGATGGTGTGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAG 191539
Query 139834 ATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATA 139893
| || |||||| | ||||| || || ||||| | |||| || ||||| ||
Sbjct 191538 TACTTTTGCGACATGTAGTCGTAAGTCTCAATGGCCTTTTCAATGTCATCGCCGTGTATG 191479
Query 139894 CCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACC 139938
||||| | |||||||| ||||| ||||| || ||||| |||
Sbjct 191478 CCGACGGCAACTCGCATGAGCATGTGTTGTGGGCGCTCGGCAACC 191434
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
||||| || ||||| || | || || ||| |||||||||| ||| | ||||| ||
Sbjct 192858 ACCTGGAACTCACCAGCGAGCACACGGCGAGAGTAAATGTTGGAAGTGTATGGCTCGAAG 192799
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627
| ||||||||||| |||||||| | |||| || || |||||| || | | ||
Sbjct 192798 CACTCGTTGTTTCCGAGAATCTGCGAGGTGGAGGCAGTTGGCATGGGTGCGATGAGCAGC 192739
Query 138628 GAATTCCGTAAACCGTGAAGCTTG--ATTCGT-TCCTTGAGCGACGACCAGTCCCACAAA 138684
|| || || | ||||| ||| | | || | |||||||| ||||||||| | |
Sbjct 192738 GAGTTGCGGACACCGT---GCTGGGCAATCTTGGCCTTGAGCTCATCCCAGTCCCAGAGA 192682
Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716
||| |||| | || | |||||| ||||||||
Sbjct 192681 TCGGTAGGGGTCTTCTCCCACATGTCGTACTG 192650
>seq225
Length=197037
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| ||||| | || || || || || || || || || | || || ||| ||| |
Sbjct 138691 ATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCTTGGAGGTGGAATCCAGC 138750
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | ||||| |||||||||||||| || || || ||||| || ||
Sbjct 138751 GACACCATCGACAACGTAAAGTCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAG 138810
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|||||| | |||||||| || || || || || || | | | | ||||| || |||
Sbjct 138811 CAACGTCTCATCTTTGCTGGTAAGCAACTTGAAGACGGACGGACCCTCTCAGACTACAAC 138870
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913
|| || ||||| || ||||| || ||||||
Sbjct 138871 ATCCAGAAGGAGTCTACACTCCATTTGGTG 138900
>seq178
Length=462551
Score = 91.5 bits (100), Expect = 1e-13
Identities = 95/125 (76%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847
|||||||| ||||| || || || || || || ||||| ||||||||||| ||||| ||
Sbjct 349987 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGAAAG 349928
Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907
|| || |||||| | | | | || || || ||||| || ||||| |||||||| |||
Sbjct 349927 CAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACACTCCAC 349868
Query 24908 TTGGT 24912
||||
Sbjct 349867 CTGGT 349863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449895271779920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |