Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq393 165 7e-36 seq225 104 2e-17 seq178 91.5 1e-13 >seq393 Length=255347 Score = 165 bits (182), Expect = 7e-36 Identities = 429/645 (67%), Gaps = 13/645 (2%) Strand=Plus/Minus Query 139302 CTCGTACTTTTCGTAGAGTTCGTCGAA-TCGTTCACCGTAGGCGTCAGAAAGATCGCGAC 139360 |||||| | ||||| || | ||||| |||| | |||||| | || | |||| | | | Sbjct 192073 CTCGTAGCTCTCGTACAGCGCTTCGAACTCGT-CGCCGTAGACATCGGCAAGACCAGGGC 192015 Query 139361 ACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGAT 139420 ||| || || ||||| || | ||| |||||||| | | ||| ||| ||||||||| | Sbjct 192014 ACTCGTTGGGGCACATCAGGGTCCAATCGCCGTTCTCTTGGACACGCTTCATGAACAAGT 191955 Query 139421 CCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTAC 139480 | |||||||||| |||| | | | |||||| || || ||| || ||| Sbjct 191954 CGGGAATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGGTTCT 191895 Query 139481 GTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTG 139540 || || ||||| |||| || |||||||||||||| || || |||||||| | | Sbjct 191894 TGCGCAGGTCCAGGAAGCCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCAAAGG 191835 Query 139541 CGCCTTTCCGTTTG---CCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCA 139597 | ||| || ||| ||||| || ||||||| || | | || ||| |||| || | Sbjct 191834 CACCTGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACACGGA 191775 Query 139598 ACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATG--GGA-CTGTTGCGAG 139654 ||| || |||||| | | |||||||||||||| | ||| ||| | | || | Sbjct 191774 GCATGGGAATGAGACCGTTTGATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTG---G 191718 Query 139655 CTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATATTAAAACGCAA- 139713 | |||| || || |||| || || ||||| | ||||| || ||| ||||| Sbjct 191717 CACGGATTCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAAG 191658 Query 139714 TCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCAT 139773 || | | ||| ||||| || || |||||||| |||| ||| || || ||||| Sbjct 191657 TCTTG-AGTGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAG 191599 Query 139774 GACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAAC 139833 || || | || ||| | ||||| || ||||| || || ||||| || || Sbjct 191598 GAGGACATCTGGGGTGATGGTGTGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAAG 191539 Query 139834 ATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATA 139893 | || |||||| | ||||| || || ||||| | |||| || ||||| || Sbjct 191538 TACTTTTGCGACATGTAGTCGTAAGTCTCAATGGCCTTTTCAATGTCATCGCCGTGTATG 191479 Query 139894 CCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACC 139938 ||||| | |||||||| ||||| ||||| || ||||| ||| Sbjct 191478 CCGACGGCAACTCGCATGAGCATGTGTTGTGGGCGCTCGGCAACC 191434 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || ||||| || | || || ||| |||||||||| ||| | ||||| || Sbjct 192858 ACCTGGAACTCACCAGCGAGCACACGGCGAGAGTAAATGTTGGAAGTGTATGGCTCGAAG 192799 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | ||||||||||| |||||||| | |||| || || |||||| || | | || Sbjct 192798 CACTCGTTGTTTCCGAGAATCTGCGAGGTGGAGGCAGTTGGCATGGGTGCGATGAGCAGC 192739 Query 138628 GAATTCCGTAAACCGTGAAGCTTG--ATTCGT-TCCTTGAGCGACGACCAGTCCCACAAA 138684 || || || | ||||| ||| | | || | |||||||| ||||||||| | | Sbjct 192738 GAGTTGCGGACACCGT---GCTGGGCAATCTTGGCCTTGAGCTCATCCCAGTCCCAGAGA 192682 Query 138685 TCGCTAGGTTTTTTGTTCCACATATCGTACTG 138716 ||| |||| | || | |||||| |||||||| Sbjct 192681 TCGGTAGGGGTCTTCTCCCACATGTCGTACTG 192650 >seq225 Length=197037 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| | || || || || || || || || || | || || ||| ||| | Sbjct 138691 ATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCTTGGAGGTGGAATCCAGC 138750 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | ||||| |||||||||||||| || || || ||||| || || Sbjct 138751 GACACCATCGACAACGTAAAGTCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCAG 138810 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | |||||||| || || || || || || | | | | ||||| || ||| Sbjct 138811 CAACGTCTCATCTTTGCTGGTAAGCAACTTGAAGACGGACGGACCCTCTCAGACTACAAC 138870 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || || ||||| || ||||| || |||||| Sbjct 138871 ATCCAGAAGGAGTCTACACTCCATTTGGTG 138900 >seq178 Length=462551 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 24788 AAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTTGCCGGGAAA 24847 |||||||| ||||| || || || || || || ||||| ||||||||||| ||||| || Sbjct 349987 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGAAAG 349928 Query 24848 CAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCGACACTACAC 24907 || || |||||| | | | | || || || ||||| || ||||| |||||||| ||| Sbjct 349927 CAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACACTCCAC 349868 Query 24908 TTGGT 24912 |||| Sbjct 349867 CTGGT 349863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449895271779920