Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq225 111 1e-19
seq385 102 5e-17
seq178 102 5e-17
>seq225
Length=197037
Score = 111 bits (122), Expect = 1e-19
Identities = 138/189 (73%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824
|||||| || || | |||| ||||||||||||||| ||||| || ||| |||| ||||
Sbjct 138447 CAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGGCCATC 138388
Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| ||||||||||||||||| ||||| || ||||| || | || | |||||||||||
Sbjct 138387 CTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGAATGCCCTCCTTGTC 138328
Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944
| || || |||||| | || | || | |||||| |||| || |||||
Sbjct 138327 TTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACTTCAAGCGTGATGGT 138268
Query 34945 CTTTCCCGT 34953
||| || ||
Sbjct 138267 CTTGCCGGT 138259
Score = 107 bits (118), Expect = 1e-18
Identities = 95/119 (80%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || || | |||| ||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 138163 AGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 138104
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| || ||||| ||||||||||||| |||||||||||| | || | |||||||||||
Sbjct 138103 TCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 138045
Score = 107 bits (118), Expect = 1e-18
Identities = 139/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845
||||||||| ||||| ||||| || ||| | || | || || |||||||| || || ||
Sbjct 138882 CTCCTTCTGGATGTTGTAGTCTGAGAGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAA 138823
Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905
||| || ||||||||||| | || | ||||||||||| | || || || |||
Sbjct 138822 GATGAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTT 138763
Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965
| || | || ||| || || || | ||| ||||||||||| ||||| ||||| ||
Sbjct 138762 GTCGATGGTGTCGCTGGATTCCACCTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGAC 138703
Query 34966 AAAGATCTGCAT 34977
||||| |||||
Sbjct 138702 GAAGATTTGCAT 138691
Score = 86.0 bits (94), Expect = 4e-12
Identities = 146/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| || || | |||| ||||||||| ||||| ||||| || | || | ||
Sbjct 138674 AGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCT 138615
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || |||||||| || || || ||||| | || | |||||||||||
Sbjct 138614 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCC 138555
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || ||||| | |||| || | ||| || || | || || |||
Sbjct 138554 TGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTC 138495
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|| || || |||||||| || |||||||||||
Sbjct 138494 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463
>seq385
Length=1101030
Score = 102 bits (112), Expect = 5e-17
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||| ||| | ||| ||||||||| ||||| |||||||| ||| |||| | ||
Sbjct 327356 AGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCC 327415
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| |||||||| ||||||||||| || || |||||||| | || | |||||||||||
Sbjct 327416 TCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 327474
>seq178
Length=462551
Score = 102 bits (112), Expect = 5e-17
Identities = 94/119 (79%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||||||||| | || ||||||||| ||||| ||||| || ||| |||| ||||
Sbjct 349860 AGGACCAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 349919
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884
|| |||||||||||||||||||||| || || ||||| | || | |||||||||||
Sbjct 349920 TCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTC 349978
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325691156676266
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |