Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq393 149 6e-31 seq225 125 7e-24 >seq393 Length=255347 Score = 149 bits (164), Expect = 6e-31 Identities = 287/420 (68%), Gaps = 5/420 (1%) Strand=Plus/Plus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||||||||| |||| || || || ||||| |||||||| |||||||| ||| | Sbjct 191450 CAACACATGCTCATGCGAGTTGCCGTCGGCATACACGGCGATGACATTGAAAAGGCCATT 191509 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 || || ||| | ||||| || | ||||| ||||| ||||| ||| |||| | Sbjct 191510 GAGACTTACGACTACATGTCGCAAAAGTACTTTACACACGCCTCGCCAACCCTGTTCAAC 191569 Query 7684 GCGGGCACAAACGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGC 7743 || |||||| | || || ||||||| || || | | |||| ||||||||| Sbjct 191570 GCAGGCACACCATCACCCCAGATGTCCTCCTGCTTCCTCATCGACATGAAGGAAGACAGC 191629 Query 7744 ATCGACGGCATTTACAACACGCTGCGCGA-TTGCGCCAATATTTCCAAATACGGCGGCGG 7802 ||||||||||| ||| |||| || | || |||||| || ||||| || ||||| Sbjct 191630 ATCGACGGCATCTACGACACACT-CAAGACTTGCGCTTTGATCTCCAAGACCGCTGGCGG 191688 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGG 7862 || ||||| ||||| || | || |||| ||| | ||| | ||||||||| Sbjct 191689 TATTGGTCTCAACGTCCACCGAATCCGTGCCACCGGCTCCTACATTGGCGGCACCAACGG 191748 Query 7863 AAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGA 7922 || | | | |||| | |||||| | || || | ||| ||| | | || | || || Sbjct 191749 AACATCAAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACCGCTCGCTACGTCGA 191808 Query 7923 CCAGGGGGG---AAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGA 7979 |||||| || |||||| ||| ||| ||||||||| | ||||| |||||||| || Sbjct 191809 CCAGGGTGGCAACAAGCGCCCAGGTGCCTTTGCCATCTACCTTGAGCCATGGCACGCTGA 191868 Score = 84.2 bits (92), Expect = 2e-11 Identities = 441/695 (63%), Gaps = 22/695 (3%) Strand=Plus/Plus Query 8254 GAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGC 8313 || || |||| || | ||||| ||||| || ||||||||| ||| ||||| || | Sbjct 192143 GAGACTGGTAACCCCTTTATGCTCTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAG 192202 Query 8314 AACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCC 8373 ||| ||||||||||| | || ||| || ||| | || ||||| |||||| || || Sbjct 192203 AACCTGGGCACCATTCGCAGCTCCAACCTCTGCACCGAGATTGTCGAGTACACTGCTCCT 192262 Query 8374 GACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGC 8433 || || || || || ||||| || || ||| | | | || ||| || ||||| Sbjct 192263 GATGAGGTCGCTGTCTGCAACCTGGCTTCGCTCGCTCT----GCCTTCATTTGTCGAC-T 192317 Query 8434 TCAAACACTTACGACTTTGAACAATTGAAAA-----ACGCCGT---GCAAGTGACGGTA- 8484 ||| | | ||| ||||| || |||| ||| || ||||| || | Sbjct 192318 ACAAGCGC-GGCGAGTTTGA--CTTTCAAAAGCTGCACGAGGTTACCCAAGT--CGTCAC 192372 Query 8485 -CGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGAAGCGCG-CGTAT 8542 ||||| || | || ||||| ||||| || ||| | || || ||||| || | Sbjct 192373 CCGCAACTTGAACAAGATTATTGAGGTCAACCACTACCCCGTTGAGGAGGCGCGCCGCAG 192432 Query 8543 CGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCGACGCGTTTGCCA 8602 | ||| | |||||| |||| |||| |||| || || ||||||||||| || || | Sbjct 192433 C-AACTTCCGCCACCGACCTATTGGTATGGGTGTACAGGGTCTGGCCGATGCTTTCCTCG 192491 Query 8603 TGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAAAAATAGCGGAAA 8662 ||||||| |||| ||| | | | || | ||||||||| | || || | Sbjct 192492 CCCTGCGCCTGCCCTTCGAGTCCAACCAGGCCAAGAAGCTCAACATTCAGATCTTCGAGA 192551 Query 8663 CGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAATTGGGCACGTACG 8722 | | || ||| ||| | | ||| | ||||| ||| | || | |||| Sbjct 192552 CCATCTACCACGCCGCTCTGACTTCGTCCTGCGATATTGCCAAGGAACTTGGTCCTTACG 192611 Query 8723 AATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACATGTGGAATGTCA 8782 | | |||| ||| |||| | | || || | || |||||||||||| | | Sbjct 192612 AGACCTACGAGGGATCTCCTGTCTCCAAGGGCATTCTCCAGTACGACATGTGGGAGAAGA 192671 Query 8783 CGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGC 8842 | || ||| | | ||| | ||| || | || ||| ||||| || |||| | | Sbjct 192672 CCCCTACCGATCTCTGGGACTGGGATGAGCTCAAGGCCAAGATTGCCCAGCACGGTGTCC 192731 Query 8843 GCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAATAATGGGAAACA 8902 |||| |||||| | | || |||||| || ||| | || | || || | ||||||| Sbjct 192732 GCAACTCGCTGCTCATCGCACCCATGCCAACTGCCTCCACCTCGCAGATTCTCGGAAACA 192791 Query 8903 ACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 |||| | ||| ||||| | ||| |||| | ||| Sbjct 192792 ACGAGTGCTTCGAGCCATACACTTCCAACATTTAC 192826 >seq225 Length=197037 Score = 125 bits (138), Expect = 7e-24 Identities = 144/194 (74%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||||| || || ||||| ||||| ||||||||||||||| | |||| | Sbjct 138452 AGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTGCGG 138393 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || ||||| || || || || ||||||| ||||||||||| || || ||||| || Sbjct 138392 CCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGAATGCCCTCC 138333 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || |||||||| || ||||| ||| | ||||||||||| || || || || || Sbjct 138332 TTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACTTCAAGCGTG 138273 Query 134676 ATGGTTTTACCGGT 134689 ||||| || ||||| Sbjct 138272 ATGGTCTTGCCGGT 138259 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||| | ||| || | || || || || ||||| ||||| || |||||||||||| Sbjct 138178 CCTCCACGGAGGCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138119 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| || || ||||| || ||||| || || || Sbjct 138118 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGA 138059 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||||| ||| | |||||||| || ||||| Sbjct 138058 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATGGTGTCGGAAGACTCCACC 137999 Query 134667 TCGAGAGTAATGGTTTTACCGGT 134689 || || || || || || ||||| Sbjct 137998 TCAAGGGTGATCGTCTTGCCGGT 137976 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | || || || || ||||| ||||| || ||||||||||||| Sbjct 138691 TTCCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGC 138632 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | || | ||| |||||||| || || || || || | |||||| || || || | Sbjct 138631 TCAGAGTACGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAG 138572 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || || || || || ||||| || ||||| ||| | ||||| || || || | Sbjct 138571 GGATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAA 138512 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | || | || || || || || || | || || ||||| || ||||| Sbjct 138511 CTTCCAACGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 134483 CTTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC 134542 || ||| || | || || | ||| | || || || || ||||| || ||||||||||| Sbjct 138921 CTGTCCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTC 138862 Query 134543 GCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGG 134602 | ||| | ||| || || || || || ||||| || | ||| ||||| || || Sbjct 138861 TGAGAGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGG 138802 Query 134603 CGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTC 134662 || ||||| || || ||||| || || || || ||| | |||||| ||||| Sbjct 138801 AGGGATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTGTCGATGGTGTCGCTGGATTC 138742 Query 134663 CACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATT 134714 ||| || | || ||||| || || || | ||| || ||||| ||||||||| Sbjct 138741 CACCTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 138690 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505395784563280