Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq393 118 9e-22
seq225 118 9e-22
>seq393
Length=255347
Score = 118 bits (130), Expect = 9e-22
Identities = 316/480 (66%), Gaps = 5/480 (1%)
Strand=Plus/Minus
Query 131603 GGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAAC 131662
|| || ||| |||| ||||| || | ||| ||||||||| || || |||||||| |||
Sbjct 192018 GGGCACTCGTTGGGGCACATCAGGGTCCAATCGCCGTTCTCTTGGACACGCTTCATGAAC 191959
Query 131663 AAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATA 131722
|| || || | ||| | ||||| || ||||| | || ||| || | ||
Sbjct 191958 AAGTCGGGAATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTTTCCGTGG 191899
Query 131723 AtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGCC 131782
| || || | | ||| | || | || || ||||| || || | || | ||
Sbjct 191898 TTCTTGCGCAGGTCCAGGAAGCCAAAGACATCAGCGTGCCATGGCTCAAGGTAGATGGCA 191839
Query 131783 ATTGCGCCTTTGCGCTTA---CCGCCTTGATTAACATGACGAACCATGTTGTTGTATACG 131839
| || ||| |||||| || || || | || | ||| | |||||||||||||
Sbjct 191838 AAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTTGTATACA 191779
Query 131840 CGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCTGCCATTG 131899
|| | |||||| | |||||| | |||| ||||||| ||||||| ||| ||
Sbjct 191778 CGGAGCATGGGAATGAGACCGTTTGATGTTCCGTTGGTGCCGCCAATGTAGGAGCCGGTG 191719
Query 131900 GCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAGTGCGCAT 131959
|| | |||| ||| |||||||| |||||||| || || || ||||| | |||||
Sbjct 191718 GCACGGATTCGGTGGACGTTGAGACCAATACCGCCAGCGGTCTTGGAGATCAAAGCGCAA 191659
Query 131960 TTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATGTCGACTAAAAAGCAA 132019
| | || |||| ||||| || || | |||||| | ||||||| | |||||
Sbjct 191658 GTCTTGAGTGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCATGTCGATGAGGAAGCAG 191599
Query 132020 GAGGACAACTGTTGGTGA-AATGTGCCGGCTGAAAACAATGTGGGGCTGGCGTGTGTAAA 132078
||||||| ||| ||||| |||||| || |||| || || ||||||||||||
Sbjct 191598 GAGGACATCTG-GGGTGATGGTGTGCCTGCGTTGAACAGGGTTGGCGAGGCGTGTGTAAA 191540
>seq225
Length=197037
Score = 118 bits (130), Expect = 9e-22
Identities = 145/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110
|| || || || || || ||||||||||||| | || ||||||||||||| |||||
Sbjct 138659 GTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCTTCGAGCTGCTTACCA 138600
Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170
||| | |||||||||||||| ||||| || | |||||| || || |||||| ||
Sbjct 138599 GCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCCTGAATCTTGGACTTG 138540
Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230
| | || | ||||||| | |||||||| | || |||| ||||| ||||| ||
Sbjct 138539 ACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTCTTGCCAGTCAGGGTC 138480
Query 27231 TTCACAAAGATTTGCATA 27248
|| || ||||| ||||||
Sbjct 138479 TTGACGAAGATCTGCATA 138462
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098
|||||||| | ||||| || || || || |||||||| | | | || |||||||
Sbjct 138899 ACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTCCGTCCGTCTTCA 138840
Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158
|| || ||||| || | |||||||| || || ||||| || | ||||| || || |
Sbjct 138839 AGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGG 138780
Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218
|||||| || | | | || | ||||| ||| ||| || || | || || | ||
Sbjct 138779 ATCTTGGACTTTACGTTGTCGATGGTGTCGCTGGATTCCACCTCCAAGGTGATGGTCTTT 138720
Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247
|| || ||||| || || |||||||||||
Sbjct 138719 CCTGTGAGAGTCTTGACGAAGATTTGCAT 138691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424932255940368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |