Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq393 361 6e-95 seq403 127 2e-24 seq272 89.7 6e-13 >seq393 Length=255347 Score = 361 bits (400), Expect = 6e-95 Identities = 1143/1743 (66%), Gaps = 39/1743 (2%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 |||||| ||||| ||||||| || ||| |||| || || || || |||||||| | Sbjct 191446 CCCACAACACATGCTCATGCGAGTTGCCGTCGGCATACACGGCGATGACATTGAAAAGGC 191505 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAG-GTATGTTCATTCACGCAACACCAACCCTCT 104339 | | ||||| |||||| | ||||| ||| ||| || | ||||| | |||||||| | Sbjct 191506 CATTGAGACTTACGACTACATGTCGCAAAAGTACTTT-ACACACGCCTCGCCAACCCTGT 191564 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || || |||||| |||||| |||||| |||||||| |||| || ||||| | Sbjct 191565 TCAACGCAGGCACACCATCACCCCAGATGTCCTCCTGCTTCCTCATCGACATGAAGGAAG 191624 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || ||| |||| ||||| | || || | | || || ||||| ||| |||| Sbjct 191625 ACAGCATCGACGGCATCTACGACACACTCAAGACTTGCGCTTTGATCTCCAAGACCGCTG 191684 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | |||||||| | || |||| | | |||| || ||| | || || | Sbjct 191685 GCGGTATTGGTCTCAACGTCCACCGAATCCGTGCCACCGGCTCCTACATTGGCGGCACCA 191744 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | || |||| | ||| | ||||| ||||| || |||| ||| ||| || ||||| | Sbjct 191745 ACGGAACATCAAACGGTCTCATTCCCATGCTCCGTGTATACAACAACACCGCTCGCTACG 191804 Query 104580 TAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCATGGC 104633 | | || | ||| ||| | | || | | || |||| ||||||||||||| Sbjct 191805 TCGACCAGGGTGGCAACAAGCGCCCA---GGTGCCTTTGCCATCTACCTTGAGCCATGGC 191861 Query 104634 ACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGT 104693 |||| ||| || | | ||||| || |||| ||||| || | ||||||| || Sbjct 191862 ACGCTGATGTCTTTGGCTTCCTGGACCTGCGCAAGAACCACGGAAAGGAGGAGGTTCGCG 191921 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 |||||||||||||| |||||| |||||||| || | ||||||||| | || | |||| Sbjct 191922 CCCGCGATCTCTTCTACGCTCTGTGGATTCCCGACTTGTTCATGAAGCGTGTCCAAGAGA 191981 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 ||| ||||| | || | || || || || |||||||| |||||| | || | Sbjct 191982 ACGGCGATTGGACCCTGATGTGCCCCAACGAGTGCCCTGGTCTTGCCGATGTCTACGGCG 192041 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAG--AAGGTCGGGCGACTGCGACGGT 104871 | ||||| ||||| || ||| | ||||| |||| || |||| | | |||||| Sbjct 192042 ACGAGTTCGAAGCGCTGTACGAGAGCTACGA-GAAGCAAAACAAGGGCCGC-GAGACGGT 192099 Query 104872 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 104930 | || | || | ||||| | ||||| || || |||| || |||||||||| || | Sbjct 192100 TCGCGC-CCAGAAGCTGTGGTATGCTATCCTTGAGGCTCAGACTGAGACTGGTAACCCCT 192158 Query 104931 ACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 104990 ||||| ||||| || || || |||| ||||| || || ||||| |||| || Sbjct 192159 TTATGCTCTACAAGGATGCTTGCAACCGCAAGAGCAACCAGAAGAACCTGGGCACCATTC 192218 Query 104991 AGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 105050 || ||||| ||||| || || || | || | || | |||||| ||||| | Sbjct 192219 GCAGCTCCAACCTCTGCACCGAGATTGTCGAGTACACTGCTCCTGATGAGGTCGCTGTCT 192278 Query 105051 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGAT 105109 | ||||| || || ||||||| || | ||| || | || | || ||||| Sbjct 192279 GCAACCTGGCTTCGCTCGCTCTGCCTTCATTTGTCGACTACAAGCGCGGCGA-GTTTGAC 192337 Query 105110 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGAT 105169 | | |||| || ||||| ||||| || |||||| ||| | |||| ||||||| Sbjct 192338 TTTCAAAAGCTGCACGAGGTTACCCAAGTCGTCACCCGCAACTTGAACAAGATTATTGAG 192397 Query 105170 AGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTGGT 105229 || |||||||||||| || || || | | ||||| || |||||| Sbjct 192398 GTCAACCACTACCCCGTTGAGGAGGCGCGCCGCAGCAACTTCCGCCACCGACCTATTGGT 192457 Query 105230 CTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTTGATTCCGA 105288 | ||||| |||||||| || |||| ||| | | || |||| | || || ||| | Sbjct 192458 ATGGGTGTACAGGGTCTGGCCGATGCTTTCCTCGCCCTG-CGCCTGCCCTTCGAGTCCAA 192516 Query 105289 CGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGGC 105348 | | || ||| | |||| | || || |||||||| || ||||||||||| | Sbjct 192517 CCAGGCCAAGAAGCTCAACATTCAGATCTTCGAGACCATCTACCACGCCGCTCTGACTTC 192576 Query 105349 GAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGCTTC 105408 | | || | || ||| |||||| || || |||| ||||| ||||| | || Sbjct 192577 GTCCTGCGATATTGCCAAGGAACTTGGTCCTTACGAGACCTACGAGGGATCTCCTGTCTC 192636 Query 105409 ACAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGC-TTCACTACGACTGG 105466 |||||| | || || | || ||||||| || || || | | || || |||||| Sbjct 192637 -CAAGGGCATTCTCCAGTACGACATGTGGG-AGAAGACCCCTACCGATCTCTGGGACTGG 192694 Query 105467 GAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCCA 105526 || | ||||||| || || | ||| | || ||| || ||||| || || Sbjct 192695 GATGAGCTCAAGGCCAAGATTGCCCAGCACGGTGTCCGCAACTCGCTGCTCATCGCACCC 192754 Query 105527 ATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACACG 105586 |||||||| ||||||||| | || || | || || || || ||||| || || ||||| Sbjct 192755 ATGCCAACTGCCTCCACCTCGCAGATTCTCGGAAACAACGAGTGCTTCGAGCCATACACT 192814 Query 105587 ACGAACATCTA-TCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCAT-- 105643 | ||||| || ||| | | ||||| || ||||| | | |||||| ||| Sbjct 192815 TCCAACATTTACTCT-CGCCGTGTGCTCGCTGGTGAGTTCCAGGTGGTCAAC--CCATGG 192871 Query 105644 CTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTG 105703 || | | ||||| || || || || ||||| || | |||||| | | ||| | Sbjct 192872 CTGCTCAAGGACCTTGTCGACATGGGCCTGTGGTCTGAGAACATGAAGAACCGCATCATC 192931 Query 105704 AAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTAC 105763 | ||||||||||||| | ||| |||| || |||| | ||| || | ||| Sbjct 192932 GCCGAGGGTGGTTCCATTGCACGAATTCCCAATATCCCCGATGAGACCAAGGAGCTTTAC 192991 Query 105764 CGCACAGTTTGGGAAATCAAG--ATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTC 105821 || |||||||||||| | | || | |||| || ||||| || || |||||| Sbjct 192992 AAGACTGTTTGGGAAATCTCGCAGCGCAGAA--TCATCGAGATGGCTGCCGACCGTGGTG 193049 Query 105822 GCTTCATTGATCAAAGTCAAAGT--ATGAATCTCTTCATGGAAAGTCCAACGATGTCCAA 105879 ||| || || | |||| ||| |||| || |||| | || || ||| ||| Sbjct 193050 CCTTTATCGACC--AGTCCCAGTCGTTGAACATCCACATGAAGGAGCCTACCATGGGCAA 193107 Query 105880 GCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCT 105939 | || | || |||||| | | |||||| ||||| || ||||| ||||| ||||| Sbjct 193108 GATCACGTCGATGCACTTTGCTGGATGGAAGCTTGGTCTTAAGACGGGCATGTACTACCT 193167 Query 105940 CCG 105942 ||| Sbjct 193168 CCG 193170 >seq403 Length=285126 Score = 127 bits (140), Expect = 2e-24 Identities = 165/227 (73%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 94732 ACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTT---TGATACAAAG 94788 |||||||| || || | ||||| || ||||||||| | ||| | ||| | || Sbjct 107916 ACAGTTCCCTGCATCCGCAAGAAGGCTGATTGGGCTCTTCGATGGATCTCTGACAAGAAC 107857 Query 94789 TCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCT 94848 || ||||||| | || || |||| ||||| |||||||||||||||||| Sbjct 107856 TCCA---CCTTTGCCAACCGTCTTGTCGCGTTTGCCGCCGTTGAGGGTATCTTCTTCAGC 107800 Query 94849 GGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTC 94908 ||||| ||| | | || | ||| | |||||||| ||||||||||| ||||| |||| Sbjct 107799 GGTTCATTCGCCTCCATCTTCTGGTTGAAGAAGCGTGGTCTCATGCCCGGTCTTACCTTC 107740 Query 94909 TCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 ||||||||||| ||||||||||||||||| | ||| || ||||| Sbjct 107739 TCCAACGAGCTCATCTCTCGTGACGAGGGTATGCACACCGACTTTGC 107693 >seq272 Length=11714 Score = 89.7 bits (98), Expect = 6e-13 Identities = 157/226 (69%), Gaps = 2/226 (1%) Strand=Plus/Minus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGA 9763 || ||||| ||||| ||||||| |||||||||| | | | |||||| | || || Sbjct 9218 GCGTCAATTTCATCGATGAAGATGATGCATGGTGTACTCTTACGAGCGTTGGCGAATAGG 9159 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG-GAACA 9822 || || || || |||||| ||||| ||||||||||| || || | | | || || Sbjct 9158 TCTCGGACTCGTGAGGCGCCGACACCCACAAACATCTCGACGAACTCAGAGCCGCTCACG 9099 Query 9823 TTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 | || ||| || ||| || || || || |||| ||| || || || ||||| || Sbjct 9098 CT-GAAGAATGGCACACCCGACTCTCCAGCTGTGGCCTTGGCAAGTAGCGTTTTACCTGT 9040 Query 9883 ACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 |||||| || | |||| ||||| || |||||||| |||||| Sbjct 9039 ACCTGGGGATCCAGACAGGATAGCACCGCGGGGAATCTTTGCGCCA 8994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583257781625360