Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq296 158 4e-33 seq225 122 3e-22 seq373 91.5 4e-13 >seq296 Length=470551 Score = 158 bits (174), Expect = 4e-33 Identities = 481/737 (65%), Gaps = 10/737 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||| ||| | ||||| || || || || || | | | | | | || ||| Sbjct 439884 GCTATCGGAATTGATCTGGGTACCACGTACTCGTGCGTGGGTATCTTCCGCGACGACCGT 439943 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 | ||||| || || || || || |||||| | ||||| || || | |||||| || || Sbjct 439944 ATCGAAATCATCGCCAACGACCAGGGTAACCGCACAACACCCTCTTTCGTTGCCTTCACA 440003 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || |||||| |||||||||| ||||| || || |||| || || || || Sbjct 440004 GACACCGAGCGTCTGATTGGTGACTCTGCGAAGAACCAAGTCGCCATGAACCCCGTCAAC 440063 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || || || || || ||||| || || || | | || | || || || | Sbjct 440064 ACTGTCTTCGACGCAAAGCGCCTCATCGGCCGCAAGTTCGCCGATCAAGAGGTTCAGGCC 440123 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | || || || || || | || || | | ||| || | || ||| | || || Sbjct 440124 GACATGAAGCACTTCCCCTTCAAGGTCGT-CGACAAG--GGCGGCAAGCCAGTCATCCAG 440180 Query 349499 GTTGAATATAAAGGTGAACAAAA-ACAATTTTTACCC--GAAGAAATTTCATCAATGGTT 349555 || || | || || || | || ||| || |||| || || || ||||| ||||| Sbjct 440181 GTCGAGTTCAAGGGCGAGGAGAAGACA---TTCACCCCAGAGGAGATCTCATCCATGGTC 440237 Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615 | || |||| ||||| |||||| | || | |||| || || | | |||||| Sbjct 440238 CTTACCAAGATGAGGGAAACTGCTGAGTCCTACCTCGGTGGCACCGTTAACAACGCTGTT 440297 Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675 | ||||| || ||||| || || || | || ||| || || || |||||||| Sbjct 440298 GTCACTGTCCCTGCCTACTTCAACGACTCTCAACGTCAGGCTACCAAGGATGCTGGTTTG 440357 Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735 ||||| || | || || || | || || || || ||||| || || || ||||| || Sbjct 440358 ATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATTGCCTAC 440417 Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795 || ||||| || | || | || || | || || || || || ||||||||| Sbjct 440418 GGTCTTGACAAGAAGACCCAGGGTGAGCGCAACGTCCTCATCTTCGACTTGGGTGGTGGT 440477 Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855 || || ||||| || || | || |||| ||||| || || || || || | ||||| Sbjct 440478 ACCTTCGATGTCTCCCTCTTGACTATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCC 440537 Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915 ||||| || || | ||||| || || || || || ||||| || || || || Sbjct 440538 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTTGTCAACCACTTCACCAAC 440597 Query 349916 GAATTTAAGCGTCAAGC 349932 ||||| ||||| ||||| Sbjct 440598 GAATTCAAGCG-CAAGC 440613 >seq225 Length=197037 Score = 122 bits (134), Expect = 3e-22 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||||| | || || | ||| || |||||||| || || || || || || || Sbjct 138917 CCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAG 138858 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 | || || || ||||||||||| || ||||||||||| ||||||||||| || ||||| Sbjct 138857 AGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGG 138798 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAAC 140689 || || || || || || || || | ||||| || || || | || | ||| ||| || Sbjct 138797 ATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTGTCGATGGTGTC-GCTGGATTCCAC 138739 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738 || | || | |||||||| || || || || || || || |||||| Sbjct 138738 CTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 138690 >seq373 Length=382463 Score = 91.5 bits (100), Expect = 4e-13 Identities = 96/126 (76%), Gaps = 3/126 (2%) Strand=Plus/Plus Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517 ||||||||||| | || || ||| || || | ||||||||||| ||||| || || Sbjct 185389 CGTGGCACACCGAGAGTGACGTTC---TTGGAAGACACACCAGCAAAATGGAAGGTGTTG 185445 Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577 || || | || |||| ||||||||||| ||||| ||||||| || |||||||| || Sbjct 185446 AGCGTCATCTGCGTAGCAGGCTCACCAATGGACTGGGCTGCAAGCACACCAACCATCTCA 185505 Query 377578 CCAGGA 377583 |||||| Sbjct 185506 CCAGGA 185511 Score = 84.2 bits (92), Expect = 7e-11 Identities = 165/240 (69%), Gaps = 8/240 (3%) Strand=Plus/Plus Query 378231 AATATAACCAGTTT-GACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCA 378289 ||| || || |||| | || || || || || ||||| || ||||| |||||||| ||| Sbjct 186186 AATGTATCCGGTTTCGGCT-GTCTTGACCGCTGTATCGATCAAACCCTCACGACCAGCCA 186244 Query 378290 TTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATC 378349 | || |||||||| ||||| | ||||| || |||| || | || |||| | || | Sbjct 186245 TGGCGTGGAAGAAGAATTCGGATGGAGTGAGACCACGAAGGTAAGAGTTCTCGACGAAAC 186304 Query 378350 CTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACC 378409 | | | ||||||| | |||| || | |||| || | || || | || || | Sbjct 186305 CACGAGATTCTGGCGAGTAGTCATCCTTGGAGAAATGCGGCAGGGTTCGGTACTTGAATC 186364 Query 378410 CATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAG 378466 |||||||||| || | ||| || ||| ||||| | |||| || ||||||||||| Sbjct 186365 CATATGGAATACGCTGTCCTTCCACAGCTTGTTGTCCGACAAGGGC---AACCATTTGAG 186421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515246362522442