Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq296 158 4e-33
seq225 122 3e-22
seq373 91.5 4e-13
>seq296
Length=470551
Score = 158 bits (174), Expect = 4e-33
Identities = 481/737 (65%), Gaps = 10/737 (1%)
Strand=Plus/Plus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
||||| ||||| ||| | ||||| || || || || || | | | | | | || |||
Sbjct 439884 GCTATCGGAATTGATCTGGGTACCACGTACTCGTGCGTGGGTATCTTCCGCGACGACCGT 439943
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
| ||||| || || || || || |||||| | ||||| || || | |||||| || ||
Sbjct 439944 ATCGAAATCATCGCCAACGACCAGGGTAACCGCACAACACCCTCTTTCGTTGCCTTCACA 440003
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || |||||| |||||||||| ||||| || || |||| || || || ||
Sbjct 440004 GACACCGAGCGTCTGATTGGTGACTCTGCGAAGAACCAAGTCGCCATGAACCCCGTCAAC 440063
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438
|| || || || || ||||| || || || | | || | || || || |
Sbjct 440064 ACTGTCTTCGACGCAAAGCGCCTCATCGGCCGCAAGTTCGCCGATCAAGAGGTTCAGGCC 440123
Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498
|| | || || || || || | || || | | ||| || | || ||| | || ||
Sbjct 440124 GACATGAAGCACTTCCCCTTCAAGGTCGT-CGACAAG--GGCGGCAAGCCAGTCATCCAG 440180
Query 349499 GTTGAATATAAAGGTGAACAAAA-ACAATTTTTACCC--GAAGAAATTTCATCAATGGTT 349555
|| || | || || || | || ||| || |||| || || || ||||| |||||
Sbjct 440181 GTCGAGTTCAAGGGCGAGGAGAAGACA---TTCACCCCAGAGGAGATCTCATCCATGGTC 440237
Query 349556 TTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTT 349615
| || |||| ||||| |||||| | || | |||| || || | | ||||||
Sbjct 440238 CTTACCAAGATGAGGGAAACTGCTGAGTCCTACCTCGGTGGCACCGTTAACAACGCTGTT 440297
Query 349616 ATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGC 349675
| ||||| || ||||| || || || | || ||| || || || ||||||||
Sbjct 440298 GTCACTGTCCCTGCCTACTTCAACGACTCTCAACGTCAGGCTACCAAGGATGCTGGTTTG 440357
Query 349676 ATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATAT 349735
||||| || | || || || | || || || || ||||| || || || ||||| ||
Sbjct 440358 ATTGCCGGCCTCAACGTCCTCCGTATCATCAACGAGCCCACCGCCGCTGCCATTGCCTAC 440417
Query 349736 GGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGT 349795
|| ||||| || | || | || || | || || || || || |||||||||
Sbjct 440418 GGTCTTGACAAGAAGACCCAGGGTGAGCGCAACGTCCTCATCTTCGACTTGGGTGGTGGT 440477
Query 349796 ACTTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCT 349855
|| || ||||| || || | || |||| ||||| || || || || || | |||||
Sbjct 440478 ACCTTCGATGTCTCCCTCTTGACTATTGAGGAGGGTATCTTCGAGGTCAAGTCCACTGCC 440537
Query 349856 GGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAA 349915
||||| || || | ||||| || || || || || ||||| || || || ||
Sbjct 440538 GGTGACACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTTGTCAACCACTTCACCAAC 440597
Query 349916 GAATTTAAGCGTCAAGC 349932
||||| ||||| |||||
Sbjct 440598 GAATTCAAGCG-CAAGC 440613
>seq225
Length=197037
Score = 122 bits (134), Expect = 3e-22
Identities = 166/229 (72%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570
|||||||||| | || || | ||| || |||||||| || || || || || || ||
Sbjct 138917 CCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAG 138858
Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630
| || || || ||||||||||| || ||||||||||| ||||||||||| || |||||
Sbjct 138857 AGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGG 138798
Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGG-TTCAAC 140689
|| || || || || || || || | ||||| || || || | || | ||| ||| ||
Sbjct 138797 ATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTGTCGATGGTGTC-GCTGGATTCCAC 138739
Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCATT 140738
|| | || | |||||||| || || || || || || || ||||||
Sbjct 138738 CTCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 138690
>seq373
Length=382463
Score = 91.5 bits (100), Expect = 4e-13
Identities = 96/126 (76%), Gaps = 3/126 (2%)
Strand=Plus/Plus
Query 377458 CGTGGCACACCACGTGTAACATTCGATTTAGATGCAACACCAGCAAAGTGGAAAGTATTA 377517
||||||||||| | || || ||| || || | ||||||||||| ||||| || ||
Sbjct 185389 CGTGGCACACCGAGAGTGACGTTC---TTGGAAGACACACCAGCAAAATGGAAGGTGTTG 185445
Query 377518 AGAGTTAATTGAGTAGTGGGCTCACCAATTGACTGCGCTGCAATAACGCCAACCATTTCT 377577
|| || | || |||| ||||||||||| ||||| ||||||| || |||||||| ||
Sbjct 185446 AGCGTCATCTGCGTAGCAGGCTCACCAATGGACTGGGCTGCAAGCACACCAACCATCTCA 185505
Query 377578 CCAGGA 377583
||||||
Sbjct 185506 CCAGGA 185511
Score = 84.2 bits (92), Expect = 7e-11
Identities = 165/240 (69%), Gaps = 8/240 (3%)
Strand=Plus/Plus
Query 378231 AATATAACCAGTTT-GACTAGTTTTAACTGCAGTATCAATTAAACCAACACGACCACCCA 378289
||| || || |||| | || || || || || ||||| || ||||| |||||||| |||
Sbjct 186186 AATGTATCCGGTTTCGGCT-GTCTTGACCGCTGTATCGATCAAACCCTCACGACCAGCCA 186244
Query 378290 TTGCATGGAAGAATAATTCAGTAGGAGTAAGTCCACCAATAAATGAACTCTCAATAAATC 378349
| || |||||||| ||||| | ||||| || |||| || | || |||| | || |
Sbjct 186245 TGGCGTGGAAGAAGAATTCGGATGGAGTGAGACCACGAAGGTAAGAGTTCTCGACGAAAC 186304
Query 378350 CTCTTGCGCCTGGCGAATCATCATATTTTGTATAATGAGGTAATGTACGATTCTCAAACC 378409
| | | ||||||| | |||| || | |||| || | || || | || || |
Sbjct 186305 CACGAGATTCTGGCGAGTAGTCATCCTTGGAGAAATGCGGCAGGGTTCGGTACTTGAATC 186364
Query 378410 CATATGGAATTCGTTTTCCATCAACATTCTGTTGAC---CAAGTGCAGAAACCATTTGAG 378466
|||||||||| || | ||| || ||| ||||| | |||| || |||||||||||
Sbjct 186365 CATATGGAATACGCTGTCCTTCCACAGCTTGTTGTCCGACAAGGGC---AACCATTTGAG 186421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515246362522442
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |