Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq393 255 7e-63
seq225 176 5e-39
seq178 116 4e-21
seq385 104 3e-17
>seq393
Length=255347
Score = 255 bits (282), Expect = 7e-63
Identities = 925/1429 (65%), Gaps = 44/1429 (3%)
Strand=Plus/Minus
Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGA-TACAGGTTTGTAGTGTAAGGCTCAAATGCCTC 80414
||||| || ||||| || || ||| || | ||| | |||||| ||||| || |||
Sbjct 192852 AACTCACCAGCGAGCACACGGCG-AGAGTAAATGTTGGAAGTGTATGGCTCGAAGCACTC 192794
Query 80415 GTTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATT 80474
|||||||||||| ||||| | ||| || || ||||| || ||| | ||| || ||
Sbjct 192793 GTTGTTTCCGAGAATCTGCGAGGTGGAGGCAGTTGGCATGGGTGCGATGAGCAGCGAGTT 192734
Query 80475 CCGCAGGCCGTGCT------TCTTGATATCCTCGCGCAAATCTGA---CCAAAAATCAAC 80525
|| | ||||||| ||||| ||| | || ||| | ||| | |||
Sbjct 192733 GCGGACACCGTGCTGGGCAATCTTGG---CCTTGAGCTCATCCCAGTCCCAGAGATCGGT 192677
Query 80526 CCCAACGCTGTGACCCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGC 80585
| | | | |||||||||||| ||| | ||||||| || | ||||| ||| |
Sbjct 192676 ---AGGGGTCTTCTCCCACATGTCGTACTGGAGAATGCCCTTGGAGACAGGAGATCCCTC 192620
Query 80586 GAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTG 80645
| | |||||||| || || |||||| | || || ||| | || || |||||
Sbjct 192619 GTAGGTCTCGTAAGGACCAAGTTCCTTGGCAATATCGCAGGACGAAGTCAGAGCGGCGTG 192560
Query 80646 ATAAATGCACTCAAAGACGCCCTTGTTCA-CACCGCGCGCCTG-TGGGTCGTCGAACGAC 80703
|| ||| ||| |||| |||| | | | | ||||| | || | ||||| | |
Sbjct 192559 GTAGATGGTCTCGAAGATCTGAATGTTGAGCTTCTTG-GCCTGGTTGGAC-TCGAAGGGC 192502
Query 80704 AAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGG 80763
| || || | ||| | || ||||| ||||| || || || | || || ||||||
Sbjct 192501 AGGCGCAGGGCGAGGAAAGCATCGGCCAGACCCTGTACACCCATACCAATAGGTCGGTGG 192442
Query 80764 CGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTC 80823
|| ||| || |||||| || ||||| ||| || || | ||||
Sbjct 192441 CGGAAGTTGCTGCGGCGCGCCTCCTCAACGGGGTAGTGGTTGACCTCAATAATCTTGTTC 192382
Query 80824 AGGTTGCGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCC 80883
| |||||| || || || | ||||| || || || || |||||||| || | | | |
Sbjct 192381 AAGTTGCGGGTGACGACTTGGGTAACCTCGTGCAGCTTTTGAAAGTCAAACTCGCCGCGC 192322
Query 80884 TTC------ACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCA 80937
|| ||||||| || || || || ||||| ||||| || || ||||| |||
Sbjct 192321 TTGTAGTCGACAAATGAAGGCAGAGCGAGCGAAGCCAGGTTGCAGACAGCGACCTCATCA 192262
Query 80938 GCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTT 80997
| | | || ||||||| || || ||||| | || || ||| || ||||||||
Sbjct 192261 GGAGCAGTGTACTCGACAATCTCGGTGCAGAGGTTGGAGCTGCGAATGGTGCCCAGGTTC 192202
Query 80998 TTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCG 81057
|||||||| |||| ||||||||| ||||||||| ||| | ||| |||| |||||
Sbjct 192201 TTCTGGTTGCTCTTGCGGTTGCAAGCATCCTTGTAGAGCATAAAGGGGTTACCAGTCTCA 192142
Query 81058 ACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTG 81117
||| | || ||||| || | ||| | || | || ||| || |||| |||
Sbjct 192141 GTCTGAGCCTCAAGGATAGCATACCACAGCTTCTGGGCGCGAACCGTCTCGCGGCCCTTG 192082
Query 81118 CCTTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAG 81176
|| | | || | |||| ||| | ||||||| | | |||| | || | ||
Sbjct 192081 TTTTGCTTCTCGTAGCTCTCGTACAGCG-CTTCGAACTCGTCGCCGTAGACATCGGCAAG 192023
Query 81177 GTCTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCT---ACAGCCTT 81233
| ||||||||||| |||||||||||| ||| ||| |||||||| ||| |||
Sbjct 192022 ACCAGGGCACTCGTTGGGGCACATCAGGGTCCAATCGC---CGTTCTCTTGGACACGCTT 191966
Query 81234 CATGAAAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATC 81293
|||||| ||| || ||||| || ||| ||| || |||||| ||| ||||||| |
Sbjct 191965 CATGAACAAGTCGGGAATCCACAGAGCGTAGAAGAGATCGCGGGCGCGAACCTCCTCCTT 191906
Query 81294 ACCCTGGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATA 81353
|| ||||| ||||| || || ||| | | || || || ||||||||||| || ||
Sbjct 191905 TCCGTGGTTCTTGCGCAGGTCCAGGAAGCCAAAGACATCAGCGTGCCATGGCTCAAGGTA 191846
Query 81354 CACGGCGATCGACCCCTTGCG---ACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTT 81410
| ||| | | || ||| ||||||||||| |||||| || || || |||
Sbjct 191845 GATGGCAAAGGCACCTGGGCGCTTGTTGCCACCCTGGTCGACGTAGCGAGCGGTGTTGTT 191786
Query 81411 AAATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGA 81470
||||||| | ||| || |||| ||| | ||| ||||| || || | || ||
Sbjct 191785 GTATACACGGAGCATGGGAATGAGACCGTTTGATGTTCCGTTGGTGCCGCCAATGTAGGA 191726
Query 81471 CCCCTTGGCGCGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATC 81528
|| |||| || | | || ||| ||||| || || || | ||| || |||
Sbjct 191725 GCCGGTGGCACGGATTCGGTGGACGTTG--AGACCAATACCGCCAGCGGTCTTGGAGATC 191668
Query 81529 TGAGCACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGC 81588
||| || || | || || || || || |||||||| |||| |||||||| |
Sbjct 191667 AAAGCGCAAGTCTTGAGTGTGTCGTAGATGCCGTCGATGCTGTCTTCCTTCATGTCGATG 191608
Query 81589 AAGAAACAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCG 81648
| ||| ||| |||||||| || | || ||| || |||||||| ||||| | |||
Sbjct 191607 AGGAAGCAGGAGGACATCTGGGGTGATGGTGTGCCTGCGTTGAACAGGGTTGGCGAGGCG 191548
Query 81649 TGAATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCA 81708
|| | || || | ||||| ||| || || || || | | ||| || ||
Sbjct 191547 TGTGTAAAGTACTTTTGCGACATGTAGTCGTAAGTCTCAATGGCCTTTTCAATGTCATCG 191488
Query 81709 CCGTGAATACCGATAGCTACACGCATAAACATGTACTG-GGGCGTCTCG 81756
||||| || |||| || || ||||| | ||||| || ||||| ||||
Sbjct 191487 CCGTGTATGCCGACGGCAACTCGCATGAGCATGTGTTGTGGGCG-CTCG 191440
>seq225
Length=197037
Score = 176 bits (194), Expect = 5e-39
Identities = 178/229 (78%), Gaps = 2/229 (1%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| |||||||| || || ||||||||||| || | || ||||||||
Sbjct 138463 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACTATCACGTTGGAAGTTGAGTCTTCA 138522
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | |||| ||| | ||| | || ||||||||||||||||| || ||||| |||||
Sbjct 138523 GACACGATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAGGGTATCCCTCCGGACCAA 138582
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584
|||||||| || || ||||||||||| ||||| || | ||||| || ||| ||||| ||
Sbjct 138583 CAGCGTCTCATCTTCGCTGGTAAGCAGCTCGAAGACGGCCGTACTCTGAGC-GACTACAA 138641
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633
|||| ||||| ||||| || ||||| ||| | ||||| || ||||||
Sbjct 138642 CATCCAGAAGGAGTCCACCCTGCATCTTGTCCTCCGTCTCCGTGGTGGA 138690
Score = 159 bits (176), Expect = 4e-34
Identities = 174/231 (75%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||||||||| |||||||| || || || ||||| || || | ||||| || || |
Sbjct 138690 AATGCAAATCTTCGTCAAGACTCTCACAGGAAAGACCATCACCTTGGAGGTGGAATCCAG 138749
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | || | ||| | || || || ||||||||||| || ||||| |||||
Sbjct 138750 CGACACCATCGACAACGTAAAGTCCAAGATCCAAGACAAGGAGGGCATCCCTCCGGACCA 138809
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
||| ||||| || ||||||||||||||||| || || | || ||||| ||||||| ||
Sbjct 138810 GCAACGTCTCATCTTTGCTGGTAAGCAACTTGAAGACGGACGGACCCTCTCAGACTACAA 138869
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| || || || ||| | || | ||||| || ||||||||
Sbjct 138870 CATCCAGAAGGAGTCTACACTCCATTTGGTGCTCCGTCTACGTGGTGGACA 138920
Score = 154 bits (170), Expect = 2e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || ||||| || ||||| || | ||||| || | ||| |
Sbjct 138259 ACCGGCAAGACCATCACGCTTGAAGTCGAGTCGTCCGACACCATTGACAACGTCAAGTCG 138318
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||| ||||||||||| ||||| || || |||||||| || ||||| || || |||
Sbjct 138319 AAGATTCAAGACAAGGAGGGCATTCCCCCGGATCAGCAGCGCCTGATTTTCGCCGGAAAG 138378
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
||||||||||||| || ||||| | ||||| || | || ||||| ||||| || |||
Sbjct 138379 CAACTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTCCACCCTGCAT 138438
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| |||| || ||||||||
Sbjct 138439 CTCGTCCTGCGCCTGCGCGGTGG 138461
Score = 136 bits (150), Expect = 5e-27
Identities = 152/203 (75%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 27430 ACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCT 27489
||||||||||| || || |||||||| ||||| || | ||| | ||| | |||
Sbjct 137976 ACCGGCAAGACGATCACCCTTGAGGTGGAGTCTTCCGACACCATCGACAATGTCAAGAGC 138035
Query 27490 AAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAG 27549
|| ||||||||||||||||| ||||| ||||||||||| || | || || || || |||
Sbjct 138036 AAGATTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAACGCTTGATCTTCGCCGGCAAG 138095
Query 27550 CAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCAT 27609
|| || ||||||| || ||||| | ||||| || |||| ||||| ||||| || |||
Sbjct 138096 CAGCTTGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCAT 138155
Query 27610 CTAGTCTTGCGTCTTCGCGGTGG 27632
|| ||| | || || || || ||
Sbjct 138156 CTTGTCCTCCGCCTCCGTGGAGG 138178
>seq178
Length=462551
Score = 116 bits (128), Expect = 4e-21
Identities = 115/149 (77%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 27484 AAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCT 27543
||| | || || |||||||||||||| ||||| || ||||| |||||| | || || ||
Sbjct 349993 AAGTCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCC 349934
Query 27544 GGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACT 27603
|| |||||||||||||||| || ||||| | ||||| || |||| ||||| || ||
Sbjct 349933 GGAAAGCAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACA 349874
Query 27604 CTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|| || || ||| | ||||| || |||||
Sbjct 349873 CTCCACCTGGTCCTCCGTCTCCGTGGTGG 349845
>seq385
Length=1101030
Score = 104 bits (114), Expect = 3e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27499 GACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAG 27558
||||||||||| ||||| || |||||||||||||| || || || || ||||||||||||
Sbjct 327474 GACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTCGAG 327415
Query 27559 GATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTG 27618
|| | || ||||| | ||||| || |||| ||||| || || || || | ||| |
Sbjct 327414 GACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCTC 327355
Query 27619 CGTCTTCGCGGTGGA 27633
|| || || ||||||
Sbjct 327354 CGCCTGCGTGGTGGA 327340
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570307448643680
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