Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq171 107 2e-18
seq189 86.0 5e-12
>seq171
Length=1567143
Score = 107 bits (118), Expect = 2e-18
Identities = 188/271 (69%), Gaps = 2/271 (1%)
Strand=Plus/Minus
Query 30187 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGT-GTACTCTGCTCCGA 30245
||||||||| || ||| ||| ||| |||||| |||| || | ||||||||| ||||
Sbjct 618398 CAGCTGATCGACGCCCTGGCCCTCGTAATCTGCCG-CATGCCCTTTGTACTCTGCGCCGA 618340
Query 30246 AATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 30305
|||||| ||| ||||| ||||| || || ||||| || ||| || |||| || ||
Sbjct 618339 AATGCCGCCATTGGAAACCGTATACGGGGCCCAGCTCGCCCGTCTCGTAGTGCGAGAGGC 618280
Query 30306 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCAG 30365
|| |||| | | | || | | |||||| ||||||||||||| | |||| || |
Sbjct 618279 CCACGCTGTCGAGATACTCGCGGCTGCCGTTGCCGTCCCAGATCTTGATCCCCGCGTCTG 618220
Query 30366 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 30425
||||| | || ||| || ||||||||| || ||||| | | |||||
Sbjct 618219 AGAGCGGCCCGCTGTGCGTGCTTCCGGCGACGAACCAGAGAAGCTCGCCGATTACGGCGC 618160
Query 30426 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456
| || |||| ||| || |||||||||||
Sbjct 618159 GCAGGAATACCCGCTTCGTGGTGAGGAGGGG 618129
>seq189
Length=186598
Score = 86.0 bits (94), Expect = 5e-12
Identities = 130/180 (72%), Gaps = 4/180 (2%)
Strand=Plus/Minus
Query 52729 TCGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52788
|||||||||| | ||| || ||| | ||| | || || ||||||||||||||
Sbjct 82086 TCGTCAAGGTTCGTACAAGGACCACCAAGGTGCCACAAATCGGTGACAAGTTTGCGTCTC 82027
Query 52789 -TCACGGCGCAAAAGGGGACGTGCGGAGCCGTCCTGAC-CCAGGAGGACATGCCCTTCGA 52846
|||||| |||||||| ||| || | ||| | |||||| ||||||||||||
Sbjct 82026 GTCACGGT-CAAAAGGGTACGATTGGTATCA-CCTACCGCCAGGAAGACATGCCCTTCTC 81969
Query 52847 CAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGAC 52906
|| ||| || | |||||| | |||||||||||||||||| ||||||| | |||||
Sbjct 81968 CAGGGAAGGTCTCACACCCGACTTGATCATCAACCCCCACGCCATTCCCTCGCGTATGAC 81909
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406308349910088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |