Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq225 118 7e-22
seq178 93.3 3e-14
seq385 91.5 9e-14
>seq225
Length=197037
Score = 118 bits (130), Expect = 7e-22
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||||||||||| || |||||| || ||||| || ||||| || || ||
Sbjct 138908 AGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTCCGT 138849
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||||||||| ||||| ||||| || | ||| || |||||||| || | ||||||
Sbjct 138848 CCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATGCCCTCC 138789
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
|||||| |||| || | || ||| | || ||||| | ||||| |||| |||
Sbjct 138788 TTGTCTTGGATC-TTGGACTTTACGTTGTCGATGGTGTCGCTGGATTCCACCTCCAAGGT 138730
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || || || || || |||||
Sbjct 138729 GATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCAT 138691
Score = 82.4 bits (90), Expect = 5e-11
Identities = 151/219 (69%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | || | ||| || ||| |||||| || ||||| || || || || ||
Sbjct 138680 AGACGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGG 138621
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
||||||| || || ||||| || || || | ||||||||||||||| || | ||||||
Sbjct 138620 CCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCC 138561
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| ||| || | || || | ||| |||||| ||| ||||||| ||
Sbjct 138560 TTGTC-CTGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGT 138502
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|| || || || || | || || || || ||||||||
Sbjct 138501 GATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463
>seq178
Length=462551
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | |||| ||||| || |||||| || ||||| || || ||||| || ||
Sbjct 349854 AGACGGAGGACCAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGG 349913
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| || || ||||| || ||||| || || ||||||||||||||||| || | ||||||
Sbjct 349914 CCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCC 349973
Query 34609 TTGTCTGTGATCTT 34622
||||| ||||||
Sbjct 349974 TTGTCCTGGATCTT 349987
>seq385
Length=1101030
Score = 91.5 bits (100), Expect = 9e-14
Identities = 91/118 (77%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 34498 ACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCA 34557
||||| ||||| || |||||| || ||||| || || ||||| || || |||| ||
Sbjct 327359 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCG 327418
Query 34558 AGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTG 34615
||||| || ||||| || || | |||||| |||||||| || | |||||||||||||
Sbjct 327419 AGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCTG 327476
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314728011992462
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |