Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq225 132 4e-26 seq385 91.5 1e-13 seq178 87.8 2e-12 >seq225 Length=197037 Score = 132 bits (146), Expect = 4e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 27002 AAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGAT 27061 || ||| ||||||||||| | || || |||||||| || |||||||| | ||||| | Sbjct 138249 AACAACAGTGACCGGCAAGACCATCACGCTTGAAGTCGAGTCGTCCGACACCATTGACAA 138308 Query 27062 GGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATA 27121 ||||| || ||||||||||| || ||||| || || ||||| ||||| | || | Sbjct 138309 CGTCAAGTCGAAGATTCAAGACAAGGAGGGCATTCCCCCGGATCAGCAGCGCCTGATTTT 138368 Query 27122 CGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTC 27181 |||||| || ||| | || || | ||| | ||||| ||||||||||| |||||||| Sbjct 138369 CGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTC 138428 Query 27182 GACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| | ||| | || |||| |||| ||||| || Sbjct 138429 CACCCTGCATCTCGTCCTGCGCCTGCGCGGTGGTAT 138464 >seq385 Length=1101030 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27080 AGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGA 27139 |||||| || ||||| || || || || |||||| | || | ||||||||| ||| | || Sbjct 327475 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTCGA 327416 Query 27140 AGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 ||| | ||| |||| || |||||||| || |||||||||||| | || ||||| | Sbjct 327415 GGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCT 327356 Query 27200 GCGTTTGCGGGGTGG 27214 || |||| ||||| Sbjct 327355 CCGCCTGCGTGGTGG 327341 >seq178 Length=462551 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || || ||||| || ||||| || || || ||||||||||| || | |||||| || Sbjct 349987 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGAAAG 349928 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 ||| | || || | ||| ||||||| |||||||| || ||||||||||| | || Sbjct 349927 CAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACACTCCAC 349868 Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||| | ||| | || ||||| || Sbjct 349867 CTGGTCCTCCGTCTCCGTGGTGGTAT 349842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434916149297280