Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq225 132 4e-26
seq385 91.5 1e-13
seq178 87.8 2e-12
>seq225
Length=197037
Score = 132 bits (146), Expect = 4e-26
Identities = 159/216 (74%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 27002 AAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGAT 27061
|| ||| ||||||||||| | || || |||||||| || |||||||| | ||||| |
Sbjct 138249 AACAACAGTGACCGGCAAGACCATCACGCTTGAAGTCGAGTCGTCCGACACCATTGACAA 138308
Query 27062 GGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATA 27121
||||| || ||||||||||| || ||||| || || ||||| ||||| | || |
Sbjct 138309 CGTCAAGTCGAAGATTCAAGACAAGGAGGGCATTCCCCCGGATCAGCAGCGCCTGATTTT 138368
Query 27122 CGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTC 27181
|||||| || ||| | || || | ||| | ||||| ||||||||||| ||||||||
Sbjct 138369 CGCCGGAAAGCAACTCGAGGATGGCCGCACCCTGTCCGACTACAACATTCAGAAGGAGTC 138428
Query 27182 GACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217
||| | ||| | || |||| |||| ||||| ||
Sbjct 138429 CACCCTGCATCTCGTCCTGCGCCTGCGCGGTGGTAT 138464
>seq385
Length=1101030
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 27080 AGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAACAATTGGA 27139
|||||| || ||||| || || || || |||||| | || | ||||||||| ||| | ||
Sbjct 327475 AGACAAGGAGGGCATTCCCCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAACTCGA 327416
Query 27140 AGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199
||| | ||| |||| || |||||||| || |||||||||||| | || ||||| |
Sbjct 327415 GGACGGCCGCACCCTTTCGGACTACAACATCCAGAAGGAGTCGACCCTCCACTTGGTCCT 327356
Query 27200 GCGTTTGCGGGGTGG 27214
|| |||| |||||
Sbjct 327355 CCGCCTGCGTGGTGG 327341
>seq178
Length=462551
Score = 87.8 bits (96), Expect = 2e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131
|| || || ||||| || ||||| || || || ||||||||||| || | |||||| ||
Sbjct 349987 AAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAACAGCGTTTGATCTTCGCCGGAAAG 349928
Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191
||| | || || | ||| ||||||| |||||||| || ||||||||||| | ||
Sbjct 349927 CAACTCGAGGATGGCCGCACCCTTTCCGACTACAACATCCAGAAGGAGTCGACACTCCAC 349868
Query 27192 TTGGTTTTGCGTTTGCGGGGTGGCAT 27217
|||| | ||| | || ||||| ||
Sbjct 349867 CTGGTCCTCCGTCTCCGTGGTGGTAT 349842
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434916149297280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |