Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq225 154 3e-32 seq178 109 1e-18 seq393 84.2 5e-11 >seq225 Length=197037 Score = 154 bits (170), Expect = 3e-32 Identities = 156/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||| || | |||||||| || || |||||||| || |||||||| || || | || Sbjct 138176 TCCACGGAGGCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAG 138117 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 ||| | ||||| || ||||||||||| |||||||| | |||||| ||||| || |||| Sbjct 138116 GGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAAT 138057 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || ||||||||||| ||||| || || || ||||||||||| || || ||||| Sbjct 138056 GCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTC 137997 Query 211070 GAGAGTGATCGTCTTTCCCGTGA 211092 || ||||||||||| || |||| Sbjct 137996 AAGGGTGATCGTCTTGCCGGTGA 137974 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || || ||||| || |||||||| || || | ||||||| ||| ||||| || ||| Sbjct 138893 TGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTCCGTCCGTCTTCAAGTTGC 138834 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || ||||| ||||| ||||| | || |||||||| |||||||| Sbjct 138833 TTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTG 138774 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || ||||| ||||||||||| | ||| ||||| | ||||| |||||||| ||| Sbjct 138773 GACTTTACGTTGTCGATGGTGTCGCTGGATTCCACCTCCAAGGTGATGGTCTTTCCTGTG 138714 Query 211092 AGAGTCTTTACAAACACCTGCATT 211115 |||||||| || || | |||||| Sbjct 138713 AGAGTCTTGACGAAGATTTGCATT 138690 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || || |||||||| || |||||||| || || || || | || ||| Sbjct 138674 AGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCT 138615 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || |||||||| || |||||||| || || |||||||| ||||| | || ||||||||| Sbjct 138614 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCC 138555 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| || || || || || ||||| || ||||| || | ||||| ||| Sbjct 138554 TGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTC 138495 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| || || | |||||| Sbjct 138494 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463 >seq178 Length=462551 Score = 109 bits (120), Expect = 1e-18 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || || ||||| || |||||||| || || | |||||| | ||||| Sbjct 349860 AGGACCAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 349919 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || ||||| || |||||||| | || |||||||| || |||| || ||||||||| Sbjct 349920 TCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 349979 Query 211023 TGGATCTT 211030 |||||||| Sbjct 349980 TGGATCTT 349987 >seq393 Length=255347 Score = 84.2 bits (92), Expect = 5e-11 Identities = 185/276 (67%), Gaps = 6/276 (2%) Strand=Plus/Minus Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149 |||||| ||||||||||| | ||||| ||||| ||||| || ||||| | || Sbjct 192205 GTTCTTCTGGTTGCTCTTGCGGTTGCAA---GCATCCTTGTAGAGCATAAAGGGGTTACC 192149 Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209 ||||| |||||| | || || || ||| |||| |||||| || || |||| Sbjct 192148 AGTCTCAGTCTGAGCCTCAAGGATAGCATACCACAGCTTCTGGGCGCGAACCGTCTCGCG 192089 Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269 | | || || |||||||| | | ||| ||| | ||||| || || |||||||| Sbjct 192088 GCCCTTGTTTTGCTTCTCGTAGCTCTCGTACAGCGCTTCGAACTCGTCGCCGTAGACATC 192029 Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329 | ||||| || ||| |||||||| | || |||| | |||| || | || || Sbjct 192028 GGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGTCCAATCGCCGTTCTCTTGGACACG 191969 Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365 |||||||| | ||| | |||| | || ||||| Sbjct 191968 CTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAA 191933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159145851423110