Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq225 154 3e-32
seq178 109 1e-18
seq393 84.2 5e-11
>seq225
Length=197037
Score = 154 bits (170), Expect = 3e-32
Identities = 156/203 (77%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949
|| ||| || | |||||||| || || |||||||| || |||||||| || || | ||
Sbjct 138176 TCCACGGAGGCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAG 138117
Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009
||| | ||||| || ||||||||||| |||||||| | |||||| ||||| || ||||
Sbjct 138116 GGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAAT 138057
Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069
|| ||||||||||| ||||| || || || ||||||||||| || || |||||
Sbjct 138056 GCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTC 137997
Query 211070 GAGAGTGATCGTCTTTCCCGTGA 211092
|| ||||||||||| || ||||
Sbjct 137996 AAGGGTGATCGTCTTGCCGGTGA 137974
Score = 152 bits (168), Expect = 1e-31
Identities = 156/204 (76%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971
|| || || ||||| || |||||||| || || | ||||||| ||| ||||| || |||
Sbjct 138893 TGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTCCGTCCGTCTTCAAGTTGC 138834
Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031
|| || || ||||| || ||||| ||||| ||||| | || |||||||| ||||||||
Sbjct 138833 TTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTG 138774
Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091
|| ||||| ||||||||||| | ||| ||||| | ||||| |||||||| |||
Sbjct 138773 GACTTTACGTTGTCGATGGTGTCGCTGGATTCCACCTCCAAGGTGATGGTCTTTCCTGTG 138714
Query 211092 AGAGTCTTTACAAACACCTGCATT 211115
|||||||| || || | ||||||
Sbjct 138713 AGAGTCTTGACGAAGATTTGCATT 138690
Score = 134 bits (148), Expect = 3e-26
Identities = 157/212 (74%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
|||||||| || || |||||||| || |||||||| || || || || | || |||
Sbjct 138674 AGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCT 138615
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| |||||||| || |||||||| || || |||||||| ||||| | || |||||||||
Sbjct 138614 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCC 138555
Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082
|| ||||| || || || || || ||||| || ||||| || | ||||| |||
Sbjct 138554 TGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTC 138495
Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
|| || || || ||||| || || | ||||||
Sbjct 138494 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463
>seq178
Length=462551
Score = 109 bits (120), Expect = 1e-18
Identities = 101/128 (79%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962
||||| ||||| || || ||||| || |||||||| || || | |||||| | |||||
Sbjct 349860 AGGACCAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAAAGGGTGCGGCCATCC 349919
Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022
|| || ||||| || |||||||| | || |||||||| || |||| || |||||||||
Sbjct 349920 TCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGAATGCCCTCCTTGTCC 349979
Query 211023 TGGATCTT 211030
||||||||
Sbjct 349980 TGGATCTT 349987
>seq393
Length=255347
Score = 84.2 bits (92), Expect = 5e-11
Identities = 185/276 (67%), Gaps = 6/276 (2%)
Strand=Plus/Minus
Query 178093 GTTCTTTTGGTTGCTCTTTC---TGCAAATGGCATCTTTGTACGCAATGAAGGGCATTCC 178149
|||||| ||||||||||| | ||||| ||||| ||||| || ||||| | ||
Sbjct 192205 GTTCTTCTGGTTGCTCTTGCGGTTGCAA---GCATCCTTGTAGAGCATAAAGGGGTTACC 192149
Query 178150 CACCTCAGCTTGAGCCACGAGAATGTGATGCCAAAGCTCCTGGGCTCGGACAGTCTTTTT 178209
||||| |||||| | || || || ||| |||| |||||| || || ||||
Sbjct 192148 AGTCTCAGTCTGAGCCTCAAGGATAGCATACCACAGCTTCTGGGCGCGAACCGTCTCGCG 192089
Query 178210 GGCTTTTCCTTCATTCTCGTACTTTTTGTAGAGCTCCTCGAATTCCGGTCCATAGACATC 178269
| | || || |||||||| | | ||| ||| | ||||| || || ||||||||
Sbjct 192088 GCCCTTGTTTTGCTTCTCGTAGCTCTCGTACAGCGCTTCGAACTCGTCGCCGTAGACATC 192029
Query 178270 ATCGAGACCGGGAGCCTCATTGGGGCAGAAGAGACTCCACTGACCGTCTTCCTTCACTCG 178329
| ||||| || ||| |||||||| | || |||| | |||| || | || ||
Sbjct 192028 GGCAAGACCAGGGCACTCGTTGGGGCACATCAGGGTCCAATCGCCGTTCTCTTGGACACG 191969
Query 178330 TTTCATGAAGAGGTCAGAGGTCCAGATGGCATAGAA 178365
|||||||| | ||| | |||| | || |||||
Sbjct 191968 CTTCATGAACAAGTCGGGAATCCACAGAGCGTAGAA 191933
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159145851423110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |