Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq225 149 1e-30
seq105 87.8 4e-12
>seq225
Length=197037
Score = 149 bits (164), Expect = 1e-30
Identities = 160/212 (75%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| || || ||||| || || |||| ||||| ||| || ||| | || |||
Sbjct 138674 AGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCT 138615
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| ||||||||||| || || |||||||| || || ||||| ||||||||
Sbjct 138614 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCC 138555
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| || || |||||||| | || || || |||||||| |||
Sbjct 138554 TGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTC 138495
Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713
||||| |||| || || | ||| | |||||
Sbjct 138494 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463
Score = 136 bits (150), Expect = 9e-27
Identities = 143/188 (76%), Gaps = 0/188 (0%)
Strand=Plus/Minus
Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561
|||||||| || || ||||| || || |||| ||||| |||| || || | |||||
Sbjct 138163 AGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 138104
Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621
|| |||||||| || |||||||| | ||||| ||||| || ||||| || ||||||||
Sbjct 138103 TCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 138044
Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681
|| ||||| ||| ||| ||||||||||| || | ||||| || | |||||||||
Sbjct 138043 TGAATCTTGCTCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 137984
Query 225682 TTGCCCGT 225689
||||| ||
Sbjct 137983 TTGCCGGT 137976
Score = 125 bits (138), Expect = 2e-23
Identities = 150/204 (74%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570
||||| || || || || |||| ||||| || | | || | || ||||| || |||
Sbjct 138893 TGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTCCGTCCGTCTTCAAGTTGC 138834
Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630
|| ||||| ||||| || ||||| ||||| || || || || |||||||||||||||||
Sbjct 138833 TTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTG 138774
Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690
||| || ||||||||||| || |||||| || || ||||| ||||| || ||
Sbjct 138773 GACTTTACGTTGTCGATGGTGTCGCTGGATTCCACCTCCAAGGTGATGGTCTTTCCTGTG 138714
Query 225691 AAAGTTTTTATGAACACTTGCATT 225714
| ||| || | ||| | |||||||
Sbjct 138713 AGAGTCTTGACGAAGATTTGCATT 138690
Score = 113 bits (124), Expect = 1e-19
Identities = 149/207 (72%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| || | |||||| || || || ||||| || || || | ||||| |||| || ||
Sbjct 138455 CGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 138396
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || || ||||| || ||||| || || || || || || || ||||| ||
Sbjct 138395 CGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGAATGCCC 138336
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
||||||||||| ||||| ||| || || |||||||| || | || || || | |
Sbjct 138335 TCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACTTCAAGC 138276
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTT 225699
||||| |||||||| |||| ||| ||
Sbjct 138275 GTGATGGTCTTGCCGGTCACTGTTGTT 138249
>seq105
Length=3160
Score = 87.8 bits (96), Expect = 4e-12
Identities = 159/227 (70%), Gaps = 7/227 (3%)
Strand=Plus/Plus
Query 7489 TTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAA 7547
|||||| | | ||||| ||||| | | | || ||| ||| |||||| || |||
Sbjct 313 TTTTCTGTTTTAATAAGATTAGAGCTTTCAGGACCTGGTGTTCAGTATATTGC-TGATAA 371
Query 7548 TAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGT 7607
| ||| | || ||| ||||||||| || ||||| | | |||||||||||| | ||
Sbjct 372 T---CAATTATATAACAGTATTATTACTGCTCATGCTATAATAATGATTTTCTTTATGGT 428
Query 7608 TATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATT-GGTGCTC 7666
|||||| | | | ||||| || ||||| || | || | || || | |||| || | |
Sbjct 429 TATGCCAGCTTTAATAGGTGGATTCGGTAACTTTTTATTACCATT-AGGATTAGGAGGAC 487
Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713
||||||||| || || || ||||| || ||||||| | |||| ||
Sbjct 488 CTGATATGGGATTCCCTAGACTTAATAACATAAGTTACTTATTATTA 534
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192524874367316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |