Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08- 03] 414 sequences; 35,173,254 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq225 149 1e-30 seq105 87.8 4e-12 >seq225 Length=197037 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || ||||| || || |||| ||||| ||| || ||| | || ||| Sbjct 138674 AGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCGTCT 138615 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| || || |||||||| || || ||||| |||||||| Sbjct 138614 TCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGGATACCCTCCTTGTCC 138555 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| || || |||||||| | || || || |||||||| ||| Sbjct 138554 TGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAACTTCCAACGTGATAGTC 138495 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| |||| || || | ||| | ||||| Sbjct 138494 TTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463 Score = 136 bits (150), Expect = 9e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 |||||||| || || ||||| || || |||| ||||| |||| || || | ||||| Sbjct 138163 AGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCC 138104 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| | ||||| ||||| || ||||| || |||||||| Sbjct 138103 TCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGAATGCCCTCCTTGTCC 138044 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| ||| ||||||||||| || | ||||| || | ||||||||| Sbjct 138043 TGAATCTTGCTCTTGACATTGTCGATGGTGTCGGAAGACTCCACCTCAAGGGTGATCGTC 137984 Query 225682 TTGCCCGT 225689 ||||| || Sbjct 137983 TTGCCGGT 137976 Score = 125 bits (138), Expect = 2e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 ||||| || || || || |||| ||||| || | | || | || ||||| || ||| Sbjct 138893 TGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAGAGGGTCCGTCCGTCTTCAAGTTGC 138834 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || ||||| ||||| || ||||| ||||| || || || || ||||||||||||||||| Sbjct 138833 TTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTG 138774 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| || ||||||||||| || |||||| || || ||||| ||||| || || Sbjct 138773 GACTTTACGTTGTCGATGGTGTCGCTGGATTCCACCTCCAAGGTGATGGTCTTTCCTGTG 138714 Query 225691 AAAGTTTTTATGAACACTTGCATT 225714 | ||| || | ||| | ||||||| Sbjct 138713 AGAGTCTTGACGAAGATTTGCATT 138690 Score = 113 bits (124), Expect = 1e-19 Identities = 149/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| || || || ||||| || || || | ||||| |||| || || Sbjct 138455 CGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGACAGGGTG 138396 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || || ||||| || ||||| || || || || || || || ||||| || Sbjct 138395 CGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGAATGCCC 138336 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 ||||||||||| ||||| ||| || || |||||||| || | || || || | | Sbjct 138335 TCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGACTTCAAGC 138276 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTT 225699 ||||| |||||||| |||| ||| || Sbjct 138275 GTGATGGTCTTGCCGGTCACTGTTGTT 138249 >seq105 Length=3160 Score = 87.8 bits (96), Expect = 4e-12 Identities = 159/227 (70%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 7489 TTTTCTATGATTATAAGGTTAGAATTAGCTGCTCCGGGTTCTCAA-ATATTGAGTGGTAA 7547 |||||| | | ||||| ||||| | | | || ||| ||| |||||| || ||| Sbjct 313 TTTTCTGTTTTAATAAGATTAGAGCTTTCAGGACCTGGTGTTCAGTATATTGC-TGATAA 371 Query 7548 TAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGT 7607 | ||| | || ||| ||||||||| || ||||| | | |||||||||||| | || Sbjct 372 T---CAATTATATAACAGTATTATTACTGCTCATGCTATAATAATGATTTTCTTTATGGT 428 Query 7608 TATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATT-GGTGCTC 7666 |||||| | | | ||||| || ||||| || | || | || || | |||| || | | Sbjct 429 TATGCCAGCTTTAATAGGTGGATTCGGTAACTTTTTATTACCATT-AGGATTAGGAGGAC 487 Query 7667 CTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 ||||||||| || || || ||||| || ||||||| | |||| || Sbjct 488 CTGATATGGGATTCCCTAGACTTAATAACATAAGTTACTTATTATTA 534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192524874367316