Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq225 150 4e-31
seq178 134 3e-26
seq403 118 2e-21
seq385 109 1e-18
>seq225
Length=197037
Score = 150 bits (166), Expect = 4e-31
Identities = 158/205 (77%), Gaps = 2/205 (1%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| ||||| ||||| || || ||||| | ||| || || |||||||||||||| |
Sbjct 138179 ACCTCCACGGAGGCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 138120
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| || || || ||||| |||||||| ||||| ||||| ||
Sbjct 138119 CAGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGG 138060
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTT-ACGGTATCGATAGTGTCCGAAGCTTCGA 283050
||| ||||||||||| || ||||| ||| || || | ||||| ||||| |||| || |
Sbjct 138059 AATGCCCTCCTTGTCCTGAATCTT-GCTCTTGACATTGTCGATGGTGTCGGAAGACTCCA 138001
Query 283051 CTTCGAGAGTGATCGTCTTACCCGT 283075
| || || ||||||||||| || ||
Sbjct 138000 CCTCAAGGGTGATCGTCTTGCCGGT 137976
Score = 147 bits (162), Expect = 5e-30
Identities = 156/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| |||||||| || || ||||| | ||| || || || ||||||||||| |
Sbjct 138462 ACCACCGCGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGA 138403
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| |||||||||||||| ||||| || ||||| || |||| || || || || ||
Sbjct 138402 CAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGG 138343
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| |||||||||||||| ||||| | || ||| | || || ||||| || | |||||
Sbjct 138342 AATGCCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGAC 138283
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCA 283077
||| || ||||| ||||| || ||||
Sbjct 138282 TTCAAGCGTGATGGTCTTGCCGGTCA 138257
Score = 145 bits (160), Expect = 2e-29
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || |||| ||| | || || || |||||||||||||| |
Sbjct 138917 CCACCACGTAGACGGAGCACCAAATGGAGTGTAGACTCCTTCTGGATGTTGTAGTCTGAG 138858
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || || || || || ||||| || || |||||||| | |||||| ||||| ||
Sbjct 138857 AGGGTCCGTCCGTCTTCAAGTTGCTTACCAGCAAAGATGAGACGTTGCTGGTCCGGAGGG 138798
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|| |||||||||||||||||||| | |||||| | ||||| ||||| | ||| ||
Sbjct 138797 ATGCCCTCCTTGTCTTGGATCTTGGACTTTACGTTGTCGATGGTGTCGCTGGATTCCACC 138738
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATT 283100
|| | ||||| ||||| || || | |||||| ||||| || ||||||
Sbjct 138737 TCCAAGGTGATGGTCTTTCCTGTGAGAGTCTTGACGAAGATTTGCATT 138690
Score = 140 bits (154), Expect = 7e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||| || || || || ||||| | ||| || || ||||||||||||||
Sbjct 138689 CCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 138630
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| || ||||| || || || || || || || ||||| | ||| |||||||| ||
Sbjct 138629 AGAGTACGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGG 138570
Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052
|||||||||||||| || ||||| | || || | || || ||||| |||| || |||
Sbjct 138569 ATACCCTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAACT 138510
Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
|| | ||||| ||||| || |||| ||||| ||||| ||||||||
Sbjct 138509 TCCAACGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463
>seq178
Length=462551
Score = 134 bits (148), Expect = 3e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||||||||| || || || ||||| || | || || || |||||||||||||| |
Sbjct 349844 ACCACCACGGAGACGGAGGACCAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGA 349903
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| |||||||||||||| ||||| || ||||| ||||||||||| |||||||| ||
Sbjct 349904 AAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCCGGGGG 349963
Query 282992 AATACCCTCCTTGTCTTGGATCTT 283015
||| ||||||||||| ||||||||
Sbjct 349964 AATGCCCTCCTTGTCCTGGATCTT 349987
>seq403
Length=285126
Score = 118 bits (130), Expect = 2e-21
Identities = 175/248 (71%), Gaps = 0/248 (0%)
Strand=Plus/Minus
Query 230163 ATCGTCACAGAAGTAGTTGCAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGT 230222
||| |||| |||| || | | ||| |||||||| | ||||||| |||||||| |
Sbjct 107637 ATCATCACCGAAGCTGTCGAGATTGAGCAGGAGTTCCTCAGCGACGCGCTTCCTTGCGCT 107578
Query 230223 CTTATCGGCATGAATGCTGATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATT 230282
||| |||||||||| || ||||||| | || || || || ||||| || || ||| |
Sbjct 107577 CTTCTCGGCATGAACGCCACTCTCATGTGCCAGTACATTGAGTTCGTCGCCGACCGTCTG 107518
Query 230283 TTCGTGGCGCTAGGGTACGAGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAG 230342
|| | || || || || || || ||| ||| |||||||||| || ||||||
Sbjct 107517 CTCCTTGCTCTCGGCAACCCCAAGTACTACAACGCCACCAACCCCTTCGACTTCATGGAG 107458
Query 230343 CTCATTTCACTCCAGGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGG 230402
||| || || || || || ||||||||||| |||||||| | || || |||| |
Sbjct 107457 AACATCTCGCTTGCTGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTACCAAAAG 107398
Query 230403 CCCGGTGT 230410
|||||||
Sbjct 107397 GCCGGTGT 107390
>seq385
Length=1101030
Score = 109 bits (120), Expect = 1e-18
Identities = 105/135 (78%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
|||||||||||||| || |||| || | || || || |||||||||||||| | |
Sbjct 327341 CCACCACGCAGGCGGAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCCGAA 327400
Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992
|| |||||||| ||||| ||||| || ||||| ||||| | ||| || ||||| |||
Sbjct 327401 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 327460
Query 282993 ATACCCTCCTTGTCT 283007
|| ||||||||||||
Sbjct 327461 ATGCCCTCCTTGTCT 327475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046733647702756
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |