Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Stemphylium_20lycopersici_20[genbank_20GCA_5F001191545.1_202015-08-
03] 414 sequences; 35,173,254 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq225 140 3e-28
seq178 123 2e-23
seq385 111 1e-19
>seq225
Length=197037
Score = 140 bits (154), Expect = 3e-28
Identities = 156/206 (76%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| ||||| || || | || |||||||| ||| ||||||||||||||| ||||||||
Sbjct 138461 CCACCGCGCAGGCGCAGGACGAGATGCAGGGTGGACTCCTTCTGAATGTTGTAGTCGGAC 138402
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || ||||| ||||| |||||||| ||||||||||| || |||| ||||
Sbjct 138401 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATCAGGCGCTGCTGATCCGGGGGA 138342
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| || |||||||| | ||| | || | | ||| | | | |||||| |||||| ||
Sbjct 138341 ATGCCCTCCTTGT-CTTGAATCTTCGACTTGACGTTGTCAATGGTGTCGGACGACTCGAC 138283
Query 41815 CTCCACCGTTATCGTTTTACCCGTCA 41840
|| | ||| || || || || ||||
Sbjct 138282 TTCAAGCGTGATGGTCTTGCCGGTCA 138257
Score = 129 bits (142), Expect = 5e-25
Identities = 167/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | || |||||||| ||| ||||||||| ||||| ||||||
Sbjct 138689 CCACCACGGAGACGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTC 138630
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||||||||| || ||||| || || ||||||||||||| ||
Sbjct 138629 AGAGTACGGCCGTCTTCGAGCTGCTTACCAGCGAAGATGAGACGCTGTTGGTCCGGAGGG 138570
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| | || | | || | | | ||||| ||||| ||
Sbjct 138569 ATACCCTCCTTGTCC-TGAATCTTGGACTTGACATTGTCAATCGTGTCTGAAGACTCAAC 138511
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|||| ||| || || || || ||||| ||||| ||||| ||||||||
Sbjct 138510 TTCCAACGTGATAGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCAT 138463
Score = 125 bits (138), Expect = 7e-24
Identities = 152/205 (74%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || |||||||| ||| ||||||||| ||||| ||||||||
Sbjct 138178 CCTCCACGGAGGCGGAGGACAAGATGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 138119
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || ||||||||||||||||| |||| ||| || ||||| | ||||
Sbjct 138118 AGGGTGCGGCCATCCTCAAGCTGCTTGCCGGCGAAGATCAAGCGTTGCTGGTCTGGGGGA 138059
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCCA 41813
| || |||||||||| || || ||| || | || | |||||| |||||||
Sbjct 138058 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCG--ATGGTGTCGGAAGACTCCA 138001
Query 41814 CCTCCACCGTTATCGTTTTACCCGT 41838
|||| | || ||||| || || ||
Sbjct 138000 CCTCAAGGGTGATCGTCTTGCCGGT 137976
>seq178
Length=462551
Score = 123 bits (136), Expect = 2e-23
Identities = 113/143 (79%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | ||||| || || || ||||||||| ||||| ||||||||
Sbjct 349845 CCACCACGGAGACGGAGGACCAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAA 349904
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || ||||| ||||| |||||||| |||| ||||||||||||| ||||
Sbjct 349905 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAGATCAAACGCTGTTGGTCCGGGGGA 349964
Query 41756 ACGCTCTCCTTGTCCATGATTTT 41778
| || |||||||||| ||| ||
Sbjct 349965 ATGCCCTCCTTGTCCTGGATCTT 349987
>seq385
Length=1101030
Score = 111 bits (122), Expect = 1e-19
Identities = 84/99 (85%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730
||||||||| ||||| ||||| || |||||||| |||| ||||| ||||||||||||||
Sbjct 327376 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAA 327435
Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTC 41769
|| || ||||| ||||||| ||||| || |||||||||
Sbjct 327436 GATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 327474
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462301607576800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |