Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiotaphrina_20buchneri_20[genbank_20GCA_5F001599915.1_202016-03- 01] 169 sequences; 23,712,134 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq15 140 8e-28 seq5 113 1e-19 seq2 102 2e-16 >seq15 Length=722239 Score = 140 bits (154), Expect = 8e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || ||||| |||| || |||||| ||||| || ||||||| Sbjct 457039 CCACCACGGAGACGGAGCACGAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 457098 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||||| || || || |||||||| |||||||| || | ||| Sbjct 457099 AGGGTGCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGCGGG 457158 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| || ||||| || |||| ||||| || || || | || || || || Sbjct 457159 ATGCCTTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTGTCTGAAGACTCCACC 457218 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | ||||||||||| || ||||| ||||| ||||| |||||||| Sbjct 457219 TCCAAAGTGATCGTCTTACCCGTCAGGGTCTTAACGAAGATCTGCAT 457265 Score = 125 bits (138), Expect = 2e-23 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || | || | ||||| || || || || || |||||| Sbjct 456811 CCACCACGCAGACGAAGGACCAAGTGCAAAGTGCTCTCCTTCTGAATGTTGTAGTCGCTC 456870 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || | ||||| || |||||||||| ||||| || |||| Sbjct 456871 AATGTACGGCCATCCTCCAGCTGTTTACCAGCGAAGATCAACCGCTGCTGGTCTGGTGGG 456930 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || ||||| || | ||| || || || || | |||| ||||| ||| Sbjct 456931 ATACCCTCCTTGTCTTGGATCTTGGATTTGACATTGTCGATGGTATCGGAGGATTCAACT 456990 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||||||||| |||||||||||||||||||| || ||||| Sbjct 456991 TCTAGTGTGATCGTCTTGCCGGTCAGAGTCTTGACGAAGATTTGCAT 457037 Score = 120 bits (132), Expect = 7e-22 Identities = 167/233 (72%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 288244 TGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCG 288303 || ||||| ||||| | || || | || | || || || || ||||| || ||||| Sbjct 456580 TGCCCACCACGGAGACGCAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAGTCT 456639 Query 288304 GCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT 288363 | || || || || || || | || || || |||||||||| ||||| || ||| Sbjct 456640 GAAAGAGTACGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGG---TCT 456696 Query 288364 GG---GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGAT 288420 || ||| || || ||||| || || || | ||| ||||| || || | ||| ||| Sbjct 456697 GGAGGGATACCCTCCTTATCTTGAATCTTTGATTTGACGTTGTCAATCGTATCAGAAGAT 456756 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || ||||| || ||||| ||||| ||||||||||||||||| |||||||| Sbjct 456757 TCGACCTCGAGGGTAATCGTTTTCCCAGTCAGAGTCTTGACGAAGATCTGCAT 456809 Score = 116 bits (128), Expect = 9e-21 Identities = 156/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | || |||||| ||||| || ||||||| Sbjct 457267 CCACCACGGAGACGGAGCACCAGATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGAC 457326 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| | |||||| || |||||||||| ||| || || ||| Sbjct 457327 AGGGTGCGGCCATCTTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGG 457386 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || || || || || | ||||| || || || | || ||| || || Sbjct 457387 ATTCCTTCCTTGTCTTGAATCTTTGACTTCACATTGTCGATCGTGTCTGACGACTCGACC 457446 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || | ||||| ||||| || || ||||||||||||| Sbjct 457447 TCCAAGGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 457483 >seq5 Length=849029 Score = 113 bits (124), Expect = 1e-19 Identities = 135/182 (74%), Gaps = 6/182 (3%) Strand=Plus/Plus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||||| || || ||||| || || | || || || |||||||| Sbjct 477694 TTCTGGATGTTGTAGTCGGAAAGTGTCCGTCCATCCTCGAGCTGCTTGCCAGCGAAGATT 477753 Query 288346 AGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 | |||||| ||| || ||| ||||| || ||||||||||| |||| || || || Sbjct 477754 AAACGCTGCTGA---TCCGGGGGAATTCCCTCCTTATCCTGGATCTTCGACTTGACATTG 477810 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||||| || || || || || ||||| ||||| || ||||| ||||||||| Sbjct 477811 TCGATTGTGTCGCTGGACTCGACCTCAAGGGTGATGGTCTTGCCCGTCAGGGTCTTGACG 477870 Query 288463 AA 288464 || Sbjct 477871 AA 477872 >seq2 Length=1065396 Score = 102 bits (112), Expect = 2e-16 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 269130 TGACGCTATCCCATGTTCTATGATCGGTATGAATGCCGATCTCATGAATCAATATATCGA 269189 ||| ||| | |||||| || || | || |||||| || | | ||||| ||||| ||||| Sbjct 668817 TGAGGCTCTGCCATGTGCTCTGCTAGGGATGAATTCCAACTTGATGAAGCAATACATCGA 668758 Query 269190 ATTCGTGGCTGATCGTATCTTCACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAA 269249 ||||| |||||||| | || || || || | ||||| ||| ||||| || Sbjct 668757 GTTCGTTGCTGATCGCCTGCTCGTTGCGCTTGGCAACCAGAAACACTACCATTCGGCCAA 668698 Query 269250 TCCCTTCGCCTTTATGGAACTAATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCG 269309 ||| |||| ||| ||||| || || | | ||| ||||| ||||||||||| ||| | Sbjct 668697 TCCTTTCGACTTCATGGAGAGTATCTCATTGGCAGGCAAGACCAACTTCTTCGAGAAGAG 668638 Query 269310 TGTCAGCGACTATCAA 269325 ||| | ||||||||| Sbjct 668637 GGTCGGTGACTATCAA 668622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179651845679582