Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiotaphrina_20buchneri_20[genbank_20GCA_5F001599915.1_202016-03- 01] 169 sequences; 23,712,134 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 172 5e-38 seq15 105 7e-18 seq5 96.9 3e-15 >seq2 Length=1065396 Score = 172 bits (190), Expect = 5e-38 Identities = 351/514 (68%), Gaps = 8/514 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| |||||||| || || ||| | ||||| || || || || || || | Sbjct 668607 CATGACGCCCGCCTTTTGATAGTCACCGACCCTCTTCTCGAAGAAGTTGGTCTTGCCTGC 668666 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT--GGTGCCG 132708 ||| || || | ||| || || || || ||||| | | |||||| || ||| | Sbjct 668667 CAATGAGATACTCTCCATGAAGTCGAAAGGATTGGCCGAATGGTAGTGTTTCTGGTTGCC 668726 Query 132709 ATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAA 132768 | || | |||||||| | || || |||||||||||||||||| ||| | | || Sbjct 668727 A--AGCGCAACGAGCAGGCGATCAGCAACGAACTCGATGTATTGCTTCATCAAGTTGGAA 668784 Query 132769 TTAAGTCCCAGCAGACGCACC-GGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGAC 132827 || | || |||||| |||| ||||| || || || | ||| |||||||| | || Sbjct 668785 TTCATCCCTAGCAGA-GCACATGGCAGAGCCTCAGTCAAAAATTTCTGCTCGATCGTCAC 668843 Query 132828 CGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAA 132887 || ||||||| || | || || ||| || || | ||| ||| ||| Sbjct 668844 AGCCTCGGTGATAATAGCGAGAATAGCAGCTTGGCTGGGGCGGTTTCTCAAGTGCGAGAA 668903 Query 132888 CATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAA 132947 | ||| ||||||||||| ||||| ||||| || | |||||||||||||| ||| Sbjct 668904 GAGCAAACAAGCAAAGTCAGTATGCATCCCCTCATCACGTGAAATGAGTTCGTTCGAGAA 668963 Query 132948 AGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGA 133007 || || || ||||||||||| || || || |||||||| |||| ||||| ||| Sbjct 668964 AGACAGTCCAGGCATGAGGCCACGCTTCTTAAGCCAAAAGATGGAAGCGAACGAGCCACT 669023 Query 133008 AAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTT 133067 ||||||| ||||| || ||||| ||||| || ||||| | |||| || | | ||| Sbjct 669024 GAAGAAGATACCCTCCACAGCCGCAAAAGCGACGAGGCGTTGTGCGAAGGTCGAATTTTT 669083 Query 133068 G-CTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 | || | ||||| || | ||||| || ||||| Sbjct 669084 GTCTTG-TATCCATCGGATGGCCCAGTCTGCCTT 669116 Score = 109 bits (120), Expect = 5e-19 Identities = 190/276 (69%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 |||||| || ||||| ||| || | || || || | ||||||||| || || || Sbjct 669236 GTAGGTATCAATGAGAAGCGAGTAGGTCTCAGAATGGATGTTCTCCATCATAATCTGGAA 669295 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| || || |||||||| | ||| || ||| ||| | ||||| ||||| Sbjct 669296 CCCGTAGAAACAGCGCGCCTCAGGAATCTGAACCTCTCCGCTGAATCTTTCGACAAGATT 669355 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||| ||||||||||| || ||||| ||||| || || || ||||| | ||| Sbjct 669356 CTCGTTCACGATGCCGTCAGAAGCAGCGAAGAAGGCAAGGACATGAGATATGAAGTAGCG 669415 Query 133347 CTCGTTGTCGTTCAAGCG---CTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 || | ||||| | || | ||||||| | ||| ||||| || || | ||| || Sbjct 669416 TTCATCATCGTTGAGACGGTTATTCCAGTCGTGGAGGTCTTTGGAAAGATCGATCTCTTC 669475 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | |||||||| || |||||||| || || ||||| Sbjct 669476 AGCAGTCCAAAAGGATGCCTCGGCCTTCTTATACAT 669511 >seq15 Length=722239 Score = 105 bits (116), Expect = 7e-18 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || ||||| ||||| ||||||||| | || |||||| | | |||| | Sbjct 457483 TCGTCAAGACTCTCACTGGCAAGACCATCACCTTGGAGGTCGAGTCGTCAGACACGATCG 457424 Query 38314 AAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCA 38373 | | | || ||| || | ||||| || ||||| || ||||||| || || | | Sbjct 457423 ACAATGTGAAGTCAAAGATTCAAGACAAGGAAGGAATCCCTCCCGACCAGCAACGTTTGA 457364 Query 38374 TTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGG 38433 | | ||| |||||||| || || || | |||||||| ||||||||||||||| || | Sbjct 457363 TCTTCGCCGGCAAACAACTCGAAGATGGCCGCACCCTGTCCGACTACAACATCCAGAAAG 457304 Query 38434 AAGCGACGCTGCATTTGGTGCTGCGT 38459 || | || || ||| ||||||| ||| Sbjct 457303 AATCAACCCTCCATCTGGTGCTCCGT 457278 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| || ||||| | || || || || || Sbjct 457037 ATGCAAATCTTCGTCAAGACTCTGACCGGCAAGACGATCACACTAGAAGTTGAATCCTCC 456978 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | ||| || |||| ||||| ||||| || || | ||||| Sbjct 456977 GATACCATCGACAATGTCAAATCCAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAG 456918 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 |||||| | || | ||| || ||||||||||| || | || || | | |||||||||| Sbjct 456917 CAGCGGTTGATCTTCGCTGGTAAACAGCTGGAGGATGGCCGTACATTGAGCGACTACAAC 456858 Query 38424 ATCCAAAAGGA-AGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| ||| || |||| ||||| || ||| || | || || Sbjct 456857 ATTCAGAAGGAGAGC-ACTTTGCACTTGGTCCTTCGTCTGCGTGGTGG 456811 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || ||||| || ||| |||| ||||| | | Sbjct 456809 ATGCAGATCTTCGTCAAGACTCTGACTGGGAAAACGATTACCCTCGAGGTCGAATCTTCT 456750 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | || |||| | ||| ||| || | || || ||||| || || | ||||| Sbjct 456749 GATACGATTGACAACG-TCAAATCAAAGATTCAAGATAAGGAGGGTATCCCTCCAGACCA 456691 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | || | ||| || || |||||||| || | || || || |||||||| Sbjct 456690 GCAGCGATTGATCTTCGCTGGTAAGCAGCTGGAGGATGGCCGTACTCTTTCAGACTACAA 456631 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| || ||||| |||||||||||| Sbjct 456630 CATCCAGAAGGAGAGTACCCTGCACTTGGTGCTGCGT 456594 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || ||||| || || ||||| | || || ||| | | Sbjct 457265 ATGCAGATCTTCGTTAAGACCCTGACGGGTAAGACGATCACTTTGGAGGTGGAGTCTTCA 457206 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | | || || || | ||||| || || || |||||| ||||| Sbjct 457205 GACACCATCGACAATGTGAAGTCGAAGATTCAGGACAAGGAAGGCAT-CCCGCCTGACCA 457147 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || || | |||||||| ||||||||| Sbjct 457146 GCAGCGTCTTATCTTCGCTGGCAAGCAGCTAGAAGATGGCCGCACCCTGTCCGACTACAA 457087 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| | || || || | ||||| ||| Sbjct 457086 CATCCAGAAAGAATCAACCCTTCACCTCGTGCTCCGT 457050 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 38266 TCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAA 38324 |||| ||||| ||||||||| | || || ||| | | |||| | | | |||| | || Sbjct 457762 TCACCGGCAAGACCATCACCCTTGAGGTTGAGTCATCTGACACCATCGACAACG--TCAA 457705 Query 38325 GAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGG 38383 || || || | || || || |||||||| | ||||| ||||| | || | ||| || Sbjct 457704 GAGCAAGATTCAGGATAAGGAAGGAATTCCTCCTGACCAGCAGCGCTTGATCTTCGCTGG 457645 Query 38384 CAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCT 38443 ||| ||||| || |||| || || ||| ||| ||||||||||| || ||| | || || Sbjct 457644 CAAGCAGCTTGAAGACGGCCGGACGCTCTCCGATTACAACATCCAGAAAGAATCCACCCT 457585 Query 38444 GCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || | || || ||| || | || ||| Sbjct 457584 TCACCTTGTCCTTCGTCTGCGTGGAGGC 457557 >seq5 Length=849029 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 38253 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTG 38312 ||||| || || || |||||||| ||||||||| | || |||||| ||| ||||| | Sbjct 477872 TTCGTCAAGACCCTGACGGGCAAGACCATCACCCTTGAGGTCGAGTCCAGCGACACAATC 477813 Query 38313 CAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | | | || || |||| || || |||||||||||| | || || ||||| | Sbjct 477812 GACAATGTCAAGTCGAAGATCCAGGATAAGGAGGGAATTCCCCCGGATCAGCAGCGTTTA 477753 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 || | ||| ||||| ||||| || || | || || || ||||||||||||||| ||| Sbjct 477752 ATCTTCGCTGGCAAGCAGCTCGAGGATGGACGGACACTTTCCGACTACAACATCCAGAAG 477693 Query 38433 G 38433 | Sbjct 477692 G 477692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500171743384960