Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Symbiotaphrina_20buchneri_20[genbank_20GCA_5F001599915.1_202016-03- 01] 169 sequences; 23,712,134 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq28 105 4e-17 seq15 95.1 8e-14 >seq28 Length=470712 Score = 105 bits (116), Expect = 4e-17 Identities = 158/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 474659 CCGGAACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG-AGCTCATATCT 474717 |||||| | || || | |||||| | | |||||||| | | |||| || | ||||| Sbjct 127957 CCGGAAGAGATCTCCGCCATGGTTCTTGGTAAAATGAAGGAGATCGCGGAGAGC-TATCT 127899 Query 474718 TGGACAAGAAG-TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAAC 474776 ||| ||||||| | || | || || | |||||||| || ||||| || || ||||| Sbjct 127898 TGG-CAAGAAGGTCACCCACGCCGTTGTCACTGTTCCGGCCTATTTCAACGACGCTCAAA 127840 Query 474777 GTCAAGCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATG 474836 | ||||||||||| || || || | ||| | || || || ||| | ||||| | || | Sbjct 127839 GGCAAGCAACTAAGGACGCTGGTACCATTTCTGGCCTGAACGTTCTCCGTATCGTCAACG 127780 Query 474837 AACCAACAGCAGCCGCACTTGCTTATGGTCTTGATAAGA 474875 | ||||| || ||||| |||| |||||||| || |||| Sbjct 127779 AGCCAACGGCCGCCGCCATTGCGTATGGTCTGGACAAGA 127741 >seq15 Length=722239 Score = 95.1 bits (104), Expect = 8e-14 Identities = 143/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || ||||| ||||| || |||||| | || ||||| | || || Sbjct 457563 ACGCAGACGAAGGACAAGGTGAAGGGTGGATTCTTTCTGGATGTTGTAATCGGAGAGCGT 457622 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||||| ||||| ||||| || || | || || || |||||||||||||| Sbjct 457623 CCGGCCGTCTTCAAGCTGCTTGCCAGCGAAGATCAAGCGCTGCTGGTCAGGAGGAATTCC 457682 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||| || |||||||| ||||| || || || |||| || | || |||| Sbjct 457683 TTCCTTATCCTGAATCTTGCTCTTGACGTTGTCGATGGTGTCAGATGACTCAA-CCTCAA 457741 Query 480730 GGGTAATAGTTTTACCGGTGA 480750 |||| || || || ||||||| Sbjct 457742 GGGTGATGGTCTTGCCGGTGA 457762 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| ||||| || || | || || ||||| || || | || || || | ||||| Sbjct 456588 ACGGAGACGCAGCACCAAGTGCAGGGTACTCTCCTTCTGGATGTTGTAGTCTGAAAGAGT 456647 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||| ||||| || || | || || || || ||||| || || Sbjct 456648 ACGGCCATCCTCCAGCTGCTTACCAGCGAAGATCAATCGCTGCTGGTCTGGAGGGATACC 456707 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||| |||||||||||| |||||| ||||| ||||||| | || || Sbjct 456708 CTCCTTATCTTGAATCTTTGATTTGACGTTGTCAATCGTATCAGAAGATTCGACCTCGAG 456767 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||||| ||||| || || |||||||| ||||| || || Sbjct 456768 GGTAATCGTTTTCCCAGTCAGAGTCTTGACGAAGATCTG 456806 Score = 93.3 bits (102), Expect = 3e-13 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || ||||| || || |||||| | || || || | || || Sbjct 457272 ACGGAGACGGAGCACCAGATGGAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 457331 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| ||||| || || || || || | |||||| || || ||||| ||||| Sbjct 457332 GCGGCCATCTTCGAGTTGTTTGCCGGCGAAGATCAAACGTTGCTGGTCGGGAGGGATTCC 457391 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||||||||||| || ||| || || || || | | | | | ||| Sbjct 457392 TTCCTTGTCTTGAATCTTTGACTTCACATTGTCGATCGTGTCTGACGACTCGACCTCCAA 457451 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 ||| || || || || ||||||||||| |||| Sbjct 457452 -GGTGATGGTCTTGCCAGTGAGAGTCTTGACGA 457483 Score = 87.8 bits (96), Expect = 1e-11 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || || ||||| || |||||| | || || || | || || Sbjct 457044 ACGGAGACGGAGCACGAGGTGAAGGGTTGATTCTTTCTGGATGTTGTAGTCGGACAGGGT 457103 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||| ||||| || |||||||| || || ||||| || || || Sbjct 457104 GCGGCCATCTTCTAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCAGGCGGGATGCC 457163 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||| |||||||| || ||| || || || || | | | | | ||| Sbjct 457164 TTCCTTGTCCTGAATCTTCGACTTCACATTGTCGATGGTGTCTGAAGACTCCACCTCCAA 457223 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || || || ||||| || || ||||||||||| || || Sbjct 457224 -AGTGATCGTCTTACCCGTCAGGGTCTTAACGAAGATCTG 457262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268171950770012