Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Talaromyces_20cellulolyticus_20[genbank_20GCA_5F000829775.1_202015- 01-16] 60 sequences; 36,402,801 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq43 140 4e-27 seq27 91.5 2e-12 seq17 86.0 8e-11 >seq43 Length=2887201 Score = 140 bits (154), Expect = 4e-27 Identities = 100/115 (87%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 |||||||||||||||||||||||| | |||||||| | || |||||| | || || ||| Sbjct 172231 GCCGCCAACTACCTCGACATCAAGGCCCTGCTCGACGTCGGCTGCAAGACCGTCGCAAAC 172290 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||||||||| ||||||||||||||||||||||| ||||| || ||| Sbjct 172291 ATGATCAAGGGCAAGTCCCCCGAGGAGATCCGCAAGACCTTCAACATTCAGAACG 172345 >seq27 Length=4195530 Score = 91.5 bits (100), Expect = 2e-12 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 ||||||||||| | || |||| ||| || || | |||||| ||||| || ||||| || Sbjct 141975 TGGTCGACGTATCTGGCGGTGTTGTTGAACACTCTGAGCATAGGCACAAGACCGTTTGAA 141916 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 || ||||| || | | ||||| || | || || | ||| | | || Sbjct 141915 GTACCATTGGTTCCTCCGATGTAGGAACCAGTGGAACGGATGCGGTGGACATTGAGACCA 141856 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGT-TTGAGCGTGTCGTAGATGCCCTC 1630244 || || ||||| ||||||||||| | || || ||| ||||| || || ||||| ||||| Sbjct 141855 ATACCACCGGCAGACTTGGAGATCATTGCACA-TGTCTTGAGAGTATCATAGATACCCTC 141797 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| ||||||||||||| || ||||| || | || || | | || || Sbjct 141796 AATGCTGTCTTCCTTCATGTCCACAAGGAAGCAAGAAGCAAGCTGTGGTCGAGGAGTACC 141737 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGC 1630328 |||||||| | ||||| | ||| Sbjct 141736 TGCGTTGAACAAAGTGGGAGACGC 141713 Score = 87.8 bits (96), Expect = 2e-11 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 18121 GTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAG 18180 || ||||||||| |||| ||| || || ||||| | || |||| |||||||||||| Sbjct 585292 GTAGGCTGCATCGTCGATGGCTGCCCTCCAGGCATGGCCCTCACCGAAGCCGACATCCAG 585233 Query 18181 CCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCC 18240 ||||| || || ||||| || |||||| |||| || |||| || ||||| || Sbjct 585232 CCTCAAATGACCCGACGCCGCCCCGGCCAGAGCGCTCTCACCACACCCCGCAATGAAAAG 585173 Query 18241 GATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCC 18293 || | ||| || ||||| || || ||| ||| ||| |||||| |||| Sbjct 585172 GACAGAGTCGAGATTCAGTCCGGTACTGAGTGCGGATACACTCTCGGCACGCC 585120 >seq17 Length=3189086 Score = 86.0 bits (94), Expect = 8e-11 Identities = 214/316 (68%), Gaps = 13/316 (4%) Strand=Plus/Minus Query 868700 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 868759 || || || || ||| |||||| |||||||||||||| | || ||||| |||||| Sbjct 3106534 TAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCGGCAAGAGAGATGTTCTCCATG 3106475 Query 868760 CACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCC--GAGCGACGCGAGCAGGC 868817 | || ||||||| | ||||||| ||| | | || |||| || | || || | Sbjct 3106474 AAGTCAAAGGGGTTGGTGGCGTTGTAGTACTTCTTGTTGCCAAGAGCAAC-CAAG-AGAC 3106417 Query 868818 GGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCA 868877 |||| || || |||||||||||||||||||| | | |||||| |||| | || Sbjct 3106416 GGTCAGCAACGAACTCGATGTACTGGCACATCAACTTCGAGTTCATTCCGAGCAAAGCGC 3106357 Query 868878 CCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCTGCC 868937 || || | ||| ||| ||||||| || || | ||||| || || ||||| | | Sbjct 3106356 AGGGAAGAGCGTCGGTCAAGAACTCTTGTTCAATGGCAACGGCGTCAACAATGATGT-CT 3106298 Query 868938 TGGGCA--CGTCGGCCGAGG--GCTTGTTGACGAGCATCGTGTAGAGCAGGCAGGCAAAG 868993 | | | | || | ||| | ||||||| | | | | |||||| |||||||||| Sbjct 3106297 TCAATAATCTTGGGGCTAGGACGGTTGTTGAGGTG---GGAGAAGAGCAAGCAGGCAAAG 3106241 Query 868994 TCGCAGTGCA-ACCCT 869008 ||| ||| | ||||| Sbjct 3106240 TCGGTGTGAAGACCCT 3106225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107134276119020