Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Talaromyces_20pinophilus_20[genbank_20GCA_5F001571465.2_202017-07- 18] 9 sequences; 36,512,172 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 176 5e-39 seq4 129 6e-25 seq6 120 3e-22 seq1 104 2e-17 >seq2 Length=6009755 Score = 176 bits (194), Expect = 5e-39 Identities = 316/455 (69%), Gaps = 5/455 (1%) Strand=Plus/Plus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| |||||||||||| | | || ||| || |||| | |||||| Sbjct 3197148 AGAAGGCCGACTGGGCTCTGCGCTGGATCTCGGACAAGGAGTCCACCTTTGCTCAGCGCC 3197207 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || || ||||| ||||| ||||| ||||||| || ||| ||| ||| | || || | Sbjct 3197208 TTGTCGCATTCGCTGCCGTTGAGGGTATCTTCTTCTCTGGCTCTTTTGCCTCTATCTTCT 3197267 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 || | |||||||| || | ||||| ||| |||| ||| ||||||||| ||||| | | Sbjct 3197268 GGTTGAAGAAACGTGGTTTGATGCCTGGCTTGACCTTCTCCAACGAGCTTATCTCTCGTG 3197327 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||||| || |||||||||||| ||||| ||| || | | || || | Sbjct 3197328 ACGAGGGTCTTCACACCGACTTTGCCTGCTTGCTCTTCTCCCACCTCAACAACCGTCCTA 3197387 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || | | | || ||| | ||||| || ||||| || || ||| | | Sbjct 3197388 GCCCCAAGATTATTGAAGACATCATTGTTGACGCCGTTGCCATTGAACAAGAATTCTTGA 3197447 Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAA-ACGATGTCGCAATACAT 117339 |||| || || || |||| | |||| ||| | || | |||| ||||| || ||||| Sbjct 3197448 CCGACGCTCTTCC-CTGCGCTTTGCTCGGAATGAACT-CGAAGTTGATGTGCCAGTACAT 3197505 Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399 ||||||||| || ||| | || || | | || | | | ||| |||||||| | | Sbjct 3197506 CGAGTTCGTTGCTGACCGTCTCTTGGTTGCTCTTGGCAACAAGAAGTACTACAACGCCAC 3197565 Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433 |||||| | ||||| ||| | |||||| |||| Sbjct 3197566 CAACCCCTTTGACTTCATGGAGAACATCTCTCTTG 3197600 >seq4 Length=4274674 Score = 129 bits (142), Expect = 6e-25 Identities = 137/181 (76%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || ||||||||||| ||||||||| |||| ||||| || |||||| | | Sbjct 2700939 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATC 2700880 Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | | ||||| || || | ||||| ||||| |||||| | |||||||| || || Sbjct 2700879 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTG 2700820 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || || || ||||| || || | ||||| ||| ||||||||||||||||||| Sbjct 2700819 ATCTTTGCCGGAAAGCAGCTTGAAGATGGTCGCACTCTCTCCGACTACAACATCCAGAAG 2700760 Query 40879 G 40879 | Sbjct 2700759 G 2700759 >seq6 Length=3820271 Score = 120 bits (132), Expect = 3e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || || || ||||| ||||||||| | || || || || | Sbjct 3142372 ATGCAAATCTTTGTCAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 3142431 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| || |||| || || ||||| ||||| | ||||| Sbjct 3142432 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCA 3142490 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || ||||| || |||| || |||||| ||||||||| Sbjct 3142491 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAA 3142550 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||||||||| || |||| || || || || Sbjct 3142551 CATCCAGAAAGAATCCACTCTTCACCTTGT 3142580 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || ||||| || || || ||||| | || |||||| || | Sbjct 3142600 ATGCAAATCTTCGTTAAGACTCTCACTGGAAAGACGATCACATTGGAAGTCGAATCCTCA 3142659 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| ||||| ||||| | |||||||| ||||| || | ||||| Sbjct 3142660 GACACCATCGATAACG-TCAAGTCCAAAATCCAAGACAAAGAAGGCATTCCTCCTGACCA 3142718 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| ||| | || | ||| || || || || || || | || || || ||||||||| Sbjct 3142719 GCAGCGATTGATTTTCGCTGGTAAGCAACTTGAAGATGGCCGTACTCTTTCCGACTACAA 3142778 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 ||| || ||||| |||| || || || || Sbjct 3142779 CATTCAAAAGGAATCCACTCTACACCTTGT 3142808 Score = 96.9 bits (106), Expect = 4e-15 Identities = 135/187 (72%), Gaps = 2/187 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || || ||||||||| | || || || | | Sbjct 3142087 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAGTCTTCT 3142146 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| || |||| ||||| |||||||| || | ||||| Sbjct 3142147 GATACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 3142205 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| || ||||| ||||| || |||| |||||||| |||||||| Sbjct 3142206 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTCGAAGACGGTCGCACCCTTTCTGACTACAA 3142265 Query 40869 CATCCAG 40875 ||| ||| Sbjct 3142266 CATTCAG 3142272 >seq1 Length=7684667 Score = 104 bits (114), Expect = 2e-17 Identities = 89/110 (81%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| |||||| | |||||||| || | |||| ||| || || ||||| || Sbjct 2663349 GACAAGGAGGGTATCCCCCCCGACCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAA 2663290 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 |||| ||||||||| |||||||||||||||||||||| |||| || || Sbjct 2663289 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTTCA 2663240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219142037840