Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Talaromyces_20pinophilus_20[genbank_20GCA_5F001571465.2_202017-07-
18] 9 sequences; 36,512,172 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2 176 5e-39
seq4 129 6e-25
seq6 120 3e-22
seq1 104 2e-17
>seq2
Length=6009755
Score = 176 bits (194), Expect = 5e-39
Identities = 316/455 (69%), Gaps = 5/455 (1%)
Strand=Plus/Plus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
|||||||||| ||||| |||||||||||| | | || ||| || |||| | ||||||
Sbjct 3197148 AGAAGGCCGACTGGGCTCTGCGCTGGATCTCGGACAAGGAGTCCACCTTTGCTCAGCGCC 3197207
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| || || ||||| ||||| ||||| ||||||| || ||| ||| ||| | || || |
Sbjct 3197208 TTGTCGCATTCGCTGCCGTTGAGGGTATCTTCTTCTCTGGCTCTTTTGCCTCTATCTTCT 3197267
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|| | |||||||| || | ||||| ||| |||| ||| ||||||||| ||||| | |
Sbjct 3197268 GGTTGAAGAAACGTGGTTTGATGCCTGGCTTGACCTTCTCCAACGAGCTTATCTCTCGTG 3197327
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
|||||||||| || |||||||||||| ||||| ||| || | | || || |
Sbjct 3197328 ACGAGGGTCTTCACACCGACTTTGCCTGCTTGCTCTTCTCCCACCTCAACAACCGTCCTA 3197387
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| | | | || ||| | ||||| || ||||| || || ||| | |
Sbjct 3197388 GCCCCAAGATTATTGAAGACATCATTGTTGACGCCGTTGCCATTGAACAAGAATTCTTGA 3197447
Query 117282 CCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAA-ACGATGTCGCAATACAT 117339
|||| || || || |||| | |||| ||| | || | |||| ||||| || |||||
Sbjct 3197448 CCGACGCTCTTCC-CTGCGCTTTGCTCGGAATGAACT-CGAAGTTGATGTGCCAGTACAT 3197505
Query 117340 CGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCC 117399
||||||||| || ||| | || || | | || | | | ||| |||||||| | |
Sbjct 3197506 CGAGTTCGTTGCTGACCGTCTCTTGGTTGCTCTTGGCAACAAGAAGTACTACAACGCCAC 3197565
Query 117400 CAACCCGCTGGACTTTATGAACCTCATCTC-CTTG 117433
|||||| | ||||| ||| | |||||| ||||
Sbjct 3197566 CAACCCCTTTGACTTCATGGAGAACATCTCTCTTG 3197600
>seq4
Length=4274674
Score = 129 bits (142), Expect = 6e-25
Identities = 137/181 (76%), Gaps = 0/181 (0%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || ||||||||||| ||||||||| |||| ||||| || |||||| | |
Sbjct 2700939 TTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCCGACACCATC 2700880
Query 40759 CAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| | ||||| || || | ||||| ||||| |||||| | |||||||| || ||
Sbjct 2700879 GACAATGTCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCCGACCAGCAGCGTCTG 2700820
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| || || || ||||| || || | ||||| ||| |||||||||||||||||||
Sbjct 2700819 ATCTTTGCCGGAAAGCAGCTTGAAGATGGTCGCACTCTCTCCGACTACAACATCCAGAAG 2700760
Query 40879 G 40879
|
Sbjct 2700759 G 2700759
>seq6
Length=3820271
Score = 120 bits (132), Expect = 3e-22
Identities = 154/210 (73%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| || || || || || || ||||| ||||||||| | || || || || |
Sbjct 3142372 ATGCAAATCTTTGTCAAGACTCTTACCGGCAAGACCATCACCCTTGAGGTGGAGTCCTCT 3142431
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| || |||| || || ||||| ||||| | |||||
Sbjct 3142432 GACACCATCGACAACG-TCAAGTCCAAGATTCAGGATAAGGAGGGTATCCCTCCTGACCA 3142490
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| ||| || || ||||| || |||| || |||||| |||||||||
Sbjct 3142491 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACCCTCTCCGACTACAA 3142550
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||||||||| || |||| || || || ||
Sbjct 3142551 CATCCAGAAAGAATCCACTCTTCACCTTGT 3142580
Score = 105 bits (116), Expect = 7e-18
Identities = 151/210 (72%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
|||||||| ||||| || || ||||| || || || ||||| | || |||||| || |
Sbjct 3142600 ATGCAAATCTTCGTTAAGACTCTCACTGGAAAGACGATCACATTGGAAGTCGAATCCTCA 3142659
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| ||||| ||||| | |||||||| ||||| || | |||||
Sbjct 3142660 GACACCATCGATAACG-TCAAGTCCAAAATCCAAGACAAAGAAGGCATTCCTCCTGACCA 3142718
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| ||| | || | ||| || || || || || || | || || || |||||||||
Sbjct 3142719 GCAGCGATTGATTTTCGCTGGTAAGCAACTTGAAGATGGCCGTACTCTTTCCGACTACAA 3142778
Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
||| || ||||| |||| || || || ||
Sbjct 3142779 CATTCAAAAGGAATCCACTCTACACCTTGT 3142808
Score = 96.9 bits (106), Expect = 4e-15
Identities = 135/187 (72%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || ||||| || || ||||||||| | || || || | |
Sbjct 3142087 ATGCAGATCTTCGTCAAGACCCTCACTGGGAAGACCATCACCCTTGAGGTGGAGTCTTCT 3142146
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|| | | | | |||| ||||| || |||| ||||| |||||||| || | |||||
Sbjct 3142147 GATACCATCGACAACG-TCAAGTCCAAGATTCAGGACAAGGAGGGCATTCCTCCTGACCA 3142205
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| || | |||| || ||||| ||||| || |||| |||||||| ||||||||
Sbjct 3142206 GCAGCGTTTGATCTTTGCTGGCAAGCAGCTCGAAGACGGTCGCACCCTTTCTGACTACAA 3142265
Query 40869 CATCCAG 40875
||| |||
Sbjct 3142266 CATTCAG 3142272
>seq1
Length=7684667
Score = 104 bits (114), Expect = 2e-17
Identities = 89/110 (81%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| |||||| | |||||||| || | |||| ||| || || ||||| ||
Sbjct 2663349 GACAAGGAGGGTATCCCCCCCGACCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAA 2663290
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
|||| ||||||||| |||||||||||||||||||||| |||| || ||
Sbjct 2663289 GACGGCCGCACCCTCTCCGACTACAACATCCAGAAGGAGTCCACTCTTCA 2663240
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219142037840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |