Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Talaromyces_20pinophilus_20[genbank_20GCA_5F001571465.2_202017-07- 18] 9 sequences; 36,512,172 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq6 96.9 4e-15 seq4 87.8 2e-12 >seq6 Length=3820271 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||||||||| ||||| || | ||||| || | || || || |||||||||||||| Sbjct 3142790 TCCTTTTGAATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGTTGCTTACCAGCGAAA 3142731 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||||||| | || | || || ||||| |||||| |||| | Sbjct 3142730 ATCAATCGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATTTTGGACTTGACGTTA 3142671 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | ||||| ||||| || || | ||||| || || || || || ||||| || Sbjct 3142670 TCGATGGTGTCTGAGGATTCGACTTCCAATGTGATCGTCTTTCCAGTGAGAGTCTTAACG 3142611 Query 43173 AAGATTTGCAT 43183 ||||||||||| Sbjct 3142610 AAGATTTGCAT 3142600 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| |||||| || || |||||||||| ||||| || | Sbjct 3143043 ACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGACC 3142984 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 || ||||| ||||||||||| || || | |||||||||||||| || | | |||||| Sbjct 3142983 ATCTTCTAGTTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTT 3142924 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || |||||| || | | | | ||||| |||||| || || | ||||| Sbjct 3142923 ATCTTGGATTTTGCTCTTCACATTGTCAATGGTGTCTGACGATTCGACTTCCAATGTGAT 3142864 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || || || || | ||||| || || || ||||| Sbjct 3142863 AGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 3142828 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 || || || || ||||| || | || || || |||| || |||||||| |||||||| Sbjct 3142562 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAG 3142503 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGT 43111 || | ||||||||||| | || | | |||||| ||| ||| | || | |||| ||| Sbjct 3142502 ATCAAACGCTGCTGGTCAGGAGGGATACCCTCCTTATCC-TGAATCTTGGACTTGA-CGT 3142445 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| || ||||| || | |||||||| ||||| || || ||||| | Sbjct 3142444 TGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGA 3142385 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 3142384 CAAAGATTTGCAT 3142372 Score = 89.7 bits (98), Expect = 6e-13 Identities = 135/187 (72%), Gaps = 4/187 (2%) Strand=Plus/Minus Query 42999 TGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGT 43058 ||||| ||||| |||| || || || |||| || |||||||| ||||| || || | Sbjct 3142271 TGAATGTTGTAGTCAGAAAGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATCAAA 3142212 Query 43059 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCA 43116 ||||||||||| | || | || |||||||||| ||| | || | |||| ||| | | | Sbjct 3142211 CGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCC-TGAATCTTGGACTTGA-CGTTGTCGA 3142154 Query 43117 CCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGA 43176 || || || ||||| || | |||||||| || || || || ||||| || |||| Sbjct 3142153 TGGTATCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGA 3142094 Query 43177 TTTGCAT 43183 | ||||| Sbjct 3142093 TCTGCAT 3142087 >seq4 Length=4274674 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| || | ||||| || | || || |||||||| || || || | Sbjct 2700759 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGA 2700818 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG 43113 | || ||||||||||||| || | | |||||||||| ||| || |||| | Sbjct 2700819 TCAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 2700878 Query 43114 CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAA 43173 | | |||||| || || || |||| |||||||| |||||||| || ||||| || | Sbjct 2700879 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 2700938 Query 43174 A 43174 | Sbjct 2700939 A 2700939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817535670520