Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Talaromyces_20pinophilus_20[genbank_20GCA_5F001571465.2_202017-07- 18] 9 sequences; 36,512,172 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2 114 1e-20 seq6 91.5 1e-13 >seq2 Length=6009755 Score = 114 bits (126), Expect = 1e-20 Identities = 344/526 (65%), Gaps = 15/526 (3%) Strand=Plus/Plus Query 52541 TTGACAATGTTCCGTGTGTGCGCAAAAAGGATGATTGGGCATTGAAATGGATCGAAAACG 52600 ||| || ||||| || | ||||| |||| || ||||| || |||||| || Sbjct 3197124 TTGGCATAGTTCCCTGCATTCGCAAGAAGGCCGACTGGGCTCTGCGCTGGATCTCGGACA 3197183 Query 52601 ACAAAGCCACTTTTGCCGAACGTCTGGTCGCGTTTGCTATAGTGGAAGGTGTGttttttt 52660 | | |||| ||||| | || || ||||| || ||| || || ||| | || || | Sbjct 3197184 AGGAGTCCACCTTTGCTCAGCGCCTTGTCGCATTCGCTGCCGTTGAGGGTATCTTCTTCT 3197243 Query 52661 CGGGTAGTTTTGCGGCAATATTTTACATCAA-AACCTTGGGCATAATGCCCGGCCTCACG 52719 | || |||||| | || || | | || || | ||| | ||||| ||| | || Sbjct 3197244 CTGGCTCTTTTGCCTCTATCTTCTGGTTGAAGAAACGTGGTT-TGATGCCTGGCTTGACC 3197302 Query 52720 TTTAGCAACGAGTTGATATCGCGCGACGAAGGAATGCACACAGATTTTGCGTGTTTG-TA 52778 || ||||||| | || || || ||||| || | ||||| || ||||| || ||| | Sbjct 3197303 TTCTCCAACGAGCTTATCTCTCGTGACGAGGGTCTTCACACCGACTTTGCCTGCTTGCTC 3197362 Query 52779 TTATAATACGCGCGTTAAAGAAAAATTGTCATATGAAAAA----ATTCTAGACATGTTTA 52834 || | || | | || || ||| || || ||| |||||| || Sbjct 3197363 TTCTCCCAC-CTC-------AACAACCGTCCTAGCCCCAAGATTATTGAAGACATCATTG 3197414 Query 52835 AAGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCCGTATCATTGTTGG 52894 || ||||| | ||||||| |||| || || || |||||| | ||| | ||| | | Sbjct 3197415 TTGACGCCGTTGCCATTGAACAAGAATTCTTGACCGACGCTCTTCCCTGCGCTTTGCTCG 3197474 Query 52895 GCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTGTTGATGC 52954 | |||||| ||| |||||||| ||||||||||||| ||||| ||| | || ||| | Sbjct 3197475 GAATGAACTCGAAGTTGATGTGCCAGTACATCGAGTTCGTTGCTGACCGTCTCTTGGTTG 3197534 Query 52955 AGCTCGGTCAGCCGAAATACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACATAT 53014 || || | ||| ||||| || || ||||||||| || ||| | ||||| | Sbjct 3197535 CTCTTGGCAACAAGAAGTACTACAACGCCACCAACCCCTTTGACTTCATGGAGAACATCT 3197594 Query 53015 CGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTA 53060 | || | ||||| || ||||| ||||||| ||||| || || || Sbjct 3197595 CTCTTGCCGGCAAGACCAACTTCTTCGAGAAGCGTGTTGGTGACTA 3197640 >seq6 Length=3820271 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || | ||||| || || ||||| || ||||| || ||| Sbjct 3142598 CCACCACGGAGACGAAGGACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAG 3142539 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| |||||||| || ||||| |||||| ||| ||||| || ||||| Sbjct 3142538 AGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGG 3142479 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCCAC 139716 || || || || || ||| | || | || | | || | ||||| | || |||||| Sbjct 3142478 ATACCCTCCTTATCC-TGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCCAC 3142420 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | ||||||||||| | || || || || ||||||||| Sbjct 3142419 CTCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGACAAAGATTTGCATA 3142371 Score = 82.4 bits (90), Expect = 8e-11 Identities = 114/157 (73%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 |||||||||||| || |||||| |||||| ||| ||||| || ||||| ||||| || || Sbjct 3142242 GTCTTCGAGCTGCTTGCCAGCAAAGATCAAACGCTGCTGGTCAGGAGGAATGCCCTCCTT 3142183 Query 139669 GTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCA 139727 ||| ||| | || | || | | || | || || | | ||||||||||| ||| | Sbjct 3142182 GTC-CTGAATCTTGGACTTGACGTTGTCGATGGTATCAGAAGACTCCACCTCAAGGGTGA 3142124 Query 139728 CCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || || | || || ||||| || ||||| Sbjct 3142123 TGGTCTTCCCAGTGAGGGTCTTGACGAAGATCTGCAT 3142087 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | || | ||| | || || || ||||||||||| || ||| Sbjct 3142826 CCACCTCGGAGACGGAGTACAAGGTGTAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAA 3142767 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||||| || || |||||||| | |||| || ||||| || ||||| Sbjct 3142766 AGAGTACGGCCATCTTCAAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGA 3142707 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 |||||||||||||| |||||| || | | || | ||||| | || || || Sbjct 3142706 ATGCCTTCTTTGTCTTGGATTTTGGACTTGACGTTATCGATGGTGTCTGAGGATTCGACT 3142647 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | |||||| || || | || || ||||| ||||||||| Sbjct 3142646 TCCAATGTGATCGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCATA 3142599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063944192800