Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Talaromyces_20pinophilus_20[genbank_20GCA_5F001571465.2_202017-07- 18] 9 sequences; 36,512,172 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq2 178 2e-40 seq5 105 1e-18 >seq2 Length=6009755 Score = 178 bits (196), Expect = 2e-40 Identities = 191/250 (76%), Gaps = 2/250 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||||| | || || |||||||| || ||||||||||| ||||| Sbjct 2463464 GCCAAGCGTCACCGTAAGATCT-TGCGCGACAACATCCAGGGTATCACCAAGCCCGCTAT 2463406 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| |||||||||||||| ||||||||| |||| | || |||| ||||| | Sbjct 2463405 CCGCCGTCTCGCTCGTCGTGGTGGTGTCAAGCGTATCTCCGCCATGATCTACGAAGAAAC 2463346 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | |||| ||||||| || ||||||| |||||| || || || || Sbjct 2463345 CCGCGGTGTCCTCAAGACCTTCCTCGAGGGTGTTATCCGTGATGCCGTCACATACACTGA 2463286 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| || | ||| | ||||| || | || || || || Sbjct 2463285 GCACGCCAAGCGAAAGACTGTCACATCTCTCGATGTTGTCTACGCTCTCAAGCGACAGGG 2463226 Query 16672 CCGTAAGATT 16681 ||||||| || Sbjct 2463225 CCGTAAGTTT 2463216 >seq5 Length=3951088 Score = 105 bits (116), Expect = 1e-18 Identities = 86/102 (84%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| ||| ||| || || |||||||| || ||||||||||| |||| Sbjct 268482 CGCAAAGCGTCACCGCAAGAT-TCTCCGCGACAACATCCAGGGTATCACCAAGCCCGCTA 268540 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 | |||||||| || ||||||||||| ||||||||| | |||| Sbjct 268541 TTCGTCGTCTTGCGCGTCGTGGTGGTGTCAAGCGTATTTCTG 268582 Score = 95.1 bits (104), Expect = 2e-15 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATC-TTCCTCAAGACCGTTATCCATGAT 16594 || |||| ||||| | |||| || | || ||| ||||| | |||| |||| ||| Sbjct 268660 TGATCTACGAAGAAACCCGTGGCGTCCTCAA-ATCATTCCTTGAATCCGTCATCCGTGAC 268718 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || || |||||||||||||| || | |||||||| || ||| ||||| |||||||| Sbjct 268719 GCCGTCACTTATACCGAGCACGCCAAGAGGAAGACTGTGACTTCCTTGGATGTCGTCTAT 268778 Query 16655 GCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAATCTTCT 16705 || | || || || ||||||| |||| || ||||| ||||| ||||| Sbjct 268779 GCGCTTAAGCGACAGGGCCGTACCCTTTACGGATTTGGCGGTTAAACTTCT 268829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075191771237