Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Talaromyces_20pinophilus_20[genbank_20GCA_5F001571465.2_202017-07- 18] 9 sequences; 36,512,172 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 165 2e-35 seq5 107 4e-18 >seq2 Length=6009755 Score = 165 bits (182), Expect = 2e-35 Identities = 323/474 (68%), Gaps = 14/474 (3%) Strand=Plus/Minus Query 251524 TTCATCACACCTGGACGTTGATATTCAGATACACGGCGTTCGAAGAAATTAGACTTGCCC 251583 ||||| ||||| | ||||| ||| ||||| |||||||| || | |||||| Sbjct 3197661 TTCATGACACCAGCCTTCTGATAGTCACCAACACGCTTCTCGAAGAAGTTGGTCTTGCCG 3197602 Query 251584 TCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTGGCATTGTACTGCTTGGGATGG 251643 | |||||||| |||||||||||| |||||||| ||||| ||||| | ||| | | Sbjct 3197601 GCAAGAGAGATGTTCTCCATGAAGTCAAAGGGGTTGGTGGCGTTGTAGTACTTCTTGTTG 3197542 Query 251644 CCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGATACTGTCCCATCAGTTCAGAG 251703 ||||| || || |||| ||||| || || ||||| | ||||| | ||||| | ||| Sbjct 3197541 CCAAGAGCAACCAAGAGACGGTCAGCAACGAACTCGATGTACTGGCACATCAACTTCGAG 3197482 Query 251704 TTCATGCCAATCATACGACAAGGAATTGCCTCACAGATGAATTCCTTTTCGTTGGCAACT 251763 ||||| || | || | || |||| || || | |||||| | ||| ||||||| Sbjct 3197481 TTCATTCCGAGCAAAGCGCAGGGAAGAGCGTCGGTCAAGAATTCTTGTTCAATGGCAACG 3197422 Query 251764 GCCTCCTCCACAAT--TGCCTTCA-----CCTGTGCCAGAGACAGCTTGTTCTCCAGCTT 251816 | | || ||||| || ||||| | || | | ||| | ||||| || | Sbjct 3197421 G---CGTCAACAATGATGTCTTCAATAATCTTGGGGCTAGGAC-GGTTGTT---GAGGTG 3197369 Query 251817 TGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGACTGATGAACTCGTT 251876 ||| | || | | |||| | ||| ||||||||||| ||| ||| | |||||| Sbjct 3197368 GGAGAAGAGCAAGCAGGCAAAGTCGGTGTGAAGACCCTCGTCACGAGAGATAAGCTCGTT 3197309 Query 251877 GGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGA 251936 ||| | || ||||||||||| ||||| ||| | | ||||||||| | | ||| || Sbjct 3197308 GGAGAAGGTCAAGCCAGGCATCAAACCACGTTTCTTCAACCAGAAGATAGAGGCAAAAGA 3197249 Query 251937 TCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGCTCAGCAAA 251990 |||||||| | | |||||| || | |||| |||||||||| |||||| Sbjct 3197248 GCCAGAGAAGAAGATACCCTCAACGGCAGCGAATGCGACAAGGCGCTGAGCAAA 3197195 >seq5 Length=3951088 Score = 107 bits (118), Expect = 4e-18 Identities = 156/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 280138 TCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTGGACCCAATGGTGCGGGTA 280197 ||| || ||||| ||| | || || |||| ||||||||| ||||| ||||| || | Sbjct 284253 TCACCTTCCAGGTCTCTCTTGGATCTCGTATTGCTGTCATTGGTCCCAACGGTGCCGGCA 284194 Query 280198 AGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCA-GGCCACTGAGGGGTCCGTTTGG 280256 ||||||| || |||| ||||||||||| || || | |||||| || || | Sbjct 284193 AGTCTACTCTTGTCAACGTCCTGACTGGTGA-ACTTATCCCCACTGCTGGTGAGGTCTAC 284135 Query 280257 AAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCTTTCCACCACATCGAGAAC 280316 |||| ||||| || || |||||| | || ||||||||| ||||| || ||| Sbjct 284134 CAGCACGAGAACATCCGTATTGCTTACATTAAACAACACGCTTTCGCTCACATTGATAAC 284075 Query 280317 CACCTGGACATGACTCCTAACCAATACATTCAGTGGCG 280354 || || |||| ||||||| | | |||||||||||||| Sbjct 284074 CATCTCGACAAGACTCCTTCCGAGTACATTCAGTGGCG 284037 Score = 104 bits (114), Expect = 5e-17 Identities = 127/168 (76%), Gaps = 4/168 (2%) Strand=Plus/Minus Query 280657 TTGAGGACCA-TATGACCAAGCTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATT 280715 |||||| ||| | || |||| | ||||| || | ||| || ||||||||||||| Sbjct 283689 TTGAGGTCCACTGTG-CCAACTTCGGTCTCGATGCTGAGCTTGTTTCTCACTCTCGCATG 283631 Query 280716 CGCGGTCTTTCTGGAGGCCAGAAGGTCAAACTTGTCATCGGAGC-AGCTCTGTGGCAACA 280774 || ||||||||||| || ||| ||||| ||||| ||| || ||||| ||||||| Sbjct 283630 CGTGGTCTTTCTGGTGGTCAGCGTGTCAAGGTTGTCCTCGCCGCTTGCTCT-TGGCAACG 283572 Query 280775 CCCTCACGTGATCGTTCTCGACGAGCCTACCAACTATCTGGACCGCGA 280822 |||||| ||||||| || |||||||| || ||||| || ||||| || Sbjct 283571 TCCTCACTTGATCGTCCTTGACGAGCCCACTAACTACCTTGACCGTGA 283524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836681477569