Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Talaromyces_20pinophilus_20[genbank_20GCA_5F001571465.2_202017-07-
18] 9 sequences; 36,512,172 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq6 123 3e-23
seq4 114 1e-20
seq1 107 2e-18
>seq6
Length=3820271
Score = 123 bits (136), Expect = 3e-23
Identities = 144/192 (75%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|| || ||||| ||||||||||| || || || |||| ||||||||||| || |||||
Sbjct 3142562 TCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAG 3142503
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||||||||| | || | | |||||| ||| ||||| ||||| |||
Sbjct 3142502 ATCAAACGCTGCTGGTCAGGAGGGATACCCTCCTTATCCTGAATCTTGGACTTGA-CGTT 3142444
Query 46523 GCC-ACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| || ||||| || | |||||||| ||||| || || || || ||
Sbjct 3142443 GTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATGGTCTTGCCGGTAAGAGTCTTGAC 3142384
Query 46582 AAAGATTTGCAT 46593
||||||||||||
Sbjct 3142383 AAAGATTTGCAT 3142372
Score = 107 bits (118), Expect = 2e-18
Identities = 137/186 (74%), Gaps = 2/186 (1%)
Strand=Plus/Minus
Query 46409 TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAG 46468
|| || |||||||| || || ||||| |||| |||||||||||||| || || |||||
Sbjct 3142271 TGAATGTTGTAGTCAGAAAGGGTGCGACCGTCTTCGAGCTGCTTGCCAGCAAAGATCAAA 3142212
Query 46469 CGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCAC 46527
||||||||||| | || | || |||||||||| ||||| ||||| ||| | | |
Sbjct 3142211 CGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTGGACTTGA-CGTTGTCGAT 3142153
Query 46528 CGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGAT 46587
|| || || ||||| || | |||||||| || || || || || || || |||||
Sbjct 3142152 GGTATCAGAAGACTCCACCTCAAGGGTGATGGTCTTCCCAGTGAGGGTCTTGACGAAGAT 3142093
Query 46588 TTGCAT 46593
|||||
Sbjct 3142092 CTGCAT 3142087
Score = 105 bits (116), Expect = 8e-18
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
|||||||| || ||||||||||| ||||| || | || || || ||||| || |||||
Sbjct 3142790 TCCTTTTGAATGTTGTAGTCGGAAAGAGTACGGCCATCTTCAAGTTGCTTACCAGCGAAA 3142731
Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522
||||| ||||||||||| | || | || || ||||| ||| || ||||| |
Sbjct 3142730 ATCAATCGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCTTGGATTTTGGACTTGACGTTA 3142671
Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582
| | ||||| ||||| || |||| ||||| || || || || || || |||||
Sbjct 3142670 TCGATGGTGTCTGAGGATTCGACTTCCAATGTGATCGTCTTTCCAGTGAGAGTCTTAACG 3142611
Query 46583 AAGATTTGCAT 46593
|||||||||||
Sbjct 3142610 AAGATTTGCAT 3142600
Score = 96.9 bits (106), Expect = 4e-15
Identities = 161/233 (69%), Gaps = 0/233 (0%)
Strand=Plus/Minus
Query 46361 TATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAG 46420
|| ||||| || | | ||| | ||||| || | || |||||| ||||| |||||
Sbjct 3143060 TAGTTGCCACCGCGGAGACGGAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAA 3143001
Query 46421 TCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCG 46480
|| || |||||||| | || || || ||||| || || || ||||| ||||||||||||
Sbjct 3143000 TCAGAAAGAGTGCGACCATCTTCTAGTTGCTTACCAGCAAAAATCAATCGCTGCTGGTCG 3142941
Query 46481 GCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGAT 46540
| || | | |||||| || ||| || |||| | | | | ||||| ||||
Sbjct 3142940 GGTGGGATACCCTCCTTATCTTGGATTTTGCTCTTCACATTGTCAATGGTGTCTGACGAT 3142881
Query 46541 TCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| || |||| ||||| || || || |||| || || || || || |||||
Sbjct 3142880 TCGACTTCCAATGTGATAGTCTTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 3142828
>seq4
Length=4274674
Score = 114 bits (126), Expect = 1e-20
Identities = 134/181 (74%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 46404 CCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 46463
|||| ||||| ||||||||||| |||||||| | || || |||||||| ||||| || |
Sbjct 2700759 CCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGA 2700818
Query 46464 TCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG 46523
||| ||||||||||||| || | | |||||||||| |||||| ||||| |
Sbjct 2700819 TCAGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGT 2700878
Query 46524 CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAA 46583
| | |||||| || || || || | |||||||| |||||||| || || || || |
Sbjct 2700879 CGATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGA 2700938
Query 46584 A 46584
|
Sbjct 2700939 A 2700939
>seq1
Length=7684667
Score = 107 bits (118), Expect = 2e-18
Identities = 83/99 (84%), Gaps = 0/99 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| ||||||||||| ||||||||
Sbjct 2663251 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAA 2663310
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
||||| ||||||||||||| || | | |||||||||
Sbjct 2663311 GATCAAACGCTGCTGGTCGGGGGGGATACCCTCCTTGTC 2663349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238336410680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |