Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Talaromyces_20pinophilus_20[genbank_20GCA_5F001571465.2_202017-07- 18] 9 sequences; 36,512,172 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6 167 6e-36 seq9 132 1e-25 seq4 125 2e-23 >seq6 Length=3820271 Score = 167 bits (184), Expect = 6e-36 Identities = 164/212 (77%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || |||||||| ||||||||||| ||||| | ||||| |||| | ||| | |||||| Sbjct 3142811 AGTACAAGGTGTAGAGTGGATTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGGCCATCT 3142752 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || || ||||| |||||||| || | ||| || ||||| || ||||| ||||| |||||| Sbjct 3142751 TCAAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATGCCTTCTTTGTCT 3142692 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| || |||||||||||||||| ||| || || || ||||||||| Sbjct 3142691 TGGATTTTGGACTTGACGTTATCGATGGTGTCTGAGGATTCGACTTCCAATGTGATCGTC 3142632 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || || | ||| || | ||| | |||||| Sbjct 3142631 TTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 3142600 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||||||||| |||||||||||||| |||| ||||| |||| | || | || || Sbjct 3142583 AGGACAAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCGTCC 3142524 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| ||||||||||| | || || ||||| || || ||||| ||||| || Sbjct 3142523 TCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGAGGGATACCCTCCTTATCC 3142464 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| ||| || ||||||||||| |||| ||||| || | ||||| ||| Sbjct 3142463 TGAATCTTGGACTTGACGTTGTCGATGGTGTCAGAGGACTCCACCTCAAGGGTGATGGTC 3142404 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||| || | || | |||||| Sbjct 3142403 TTGCCGGTAAGAGTCTTGACAAAGATTTGCAT 3142372 Score = 143 bits (158), Expect = 6e-29 Identities = 159/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || ||||| || || |||| |||||||| | | ||| | |||||| Sbjct 3143039 AGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGACCATCT 3142980 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 ||||| ||||| ||||| || || | ||| || |||||||| || ||||| ||||| ||| Sbjct 3142979 TCTAGTTGCTTACCAGCAAAAATCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCT 3142920 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||||||| || ||||||||||| | ||| || || || ||||| ||| Sbjct 3142919 TGGATTTTGCTCTTCACATTGTCAATGGTGTCTGACGATTCGACTTCCAATGTGATAGTC 3142860 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 3142859 TTTCCGGTCAAGGTCTTGACGAAAATCTGCAT 3142828 >seq9 Length=31729 Score = 132 bits (146), Expect = 1e-25 Identities = 192/268 (72%), Gaps = 5/268 (2%) Strand=Plus/Minus Query 7447 TATTTAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGG 7506 |||||||| |||| ||||||||| | || || || |||||| | ||||||| Sbjct 25053 TATTTAATGTTTGCATTATTTTCTGGTTTAATTGGAACAGCTTTTTCTGTACTTATAAGA 24994 Query 7507 TTAGAATTAGCTGCTCCGGGTTCTCAAATATTGAG-TGGTAATAGCCAACTTTACAACGT 7565 ||||||||| | ||||| ||| ||| ||| || || |||| ||| | || || Sbjct 24993 TTAGAATTATCAGCTCCAGGTGTGCAA-TATATAGCTGATAAT---CAATTATATAATAG 24938 Query 7566 TATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGG 7625 ||| ||||| || ||||| | | |||||||||||| | |||||||| | | | ||||| Sbjct 24937 TATAATTACAGCTCATGCTATATTAATGATTTTCTTTATGGTTATGCCTGCTTTAATAGG 24878 Query 7626 CGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAG 7685 || || || |||| || | |||||| | | || | |||||| ||||| ||||| || Sbjct 24877 TGGATTTGGTAATTTTTTATTACCTTTATTAGTAGGAGGTCCTGACATGGCATTTCCTAG 24818 Query 7686 GCTTAACAATATAAGTTTTTGATTACTA 7713 | || ||||||||||| |||||| || Sbjct 24817 ATTAAATAATATAAGTTTCTGATTATTA 24790 Score = 89.7 bits (98), Expect = 1e-12 Identities = 83/103 (81%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||| ||||| |||||||| | |||||| | | |||||||| || || |||| Sbjct 24379 TTCTGGATGCCCAAAGAATCAGAAAAGATGTTGGAATAATATAGGATCACCACCACCTGC 24438 Query 370732 TGGATCAAA-AAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 || ||||| |||| | || ||||||||||||||||||||||| Sbjct 24439 TGCTTCAAAGAAAGAT-GTGTTAAAATTTCTATCAGTTAAAAC 24480 >seq4 Length=4274674 Score = 125 bits (138), Expect = 2e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 || |||| ||||| |||| | ||| | |||||||| |||||||| || || ||||| Sbjct 2700761 TTCTGGATGTTGTAGTCGGAGAGAGTGCGACCATCTTCAAGCTGCTTTCCGGCAAAGATC 2700820 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 || || || |||||||| || ||||| |||||||| |||||||| ||| ||| ||| Sbjct 2700821 AGACGCTGCTGGTCGGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTGACATTGTCG 2700880 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGT 225689 |||||||| |||| || || || | ||||| ||||||||||| Sbjct 2700881 ATGGTGTCGGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGT 2700924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531062486246