Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq2 136 8e-27 >seq2 Length=4789688 Score = 136 bits (150), Expect = 8e-27 Identities = 318/469 (68%), Gaps = 8/469 (2%) Strand=Plus/Minus Query 230173 TTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTC 230232 ||||| |||||||||| |||| | ||| || || || | || ||||| || Sbjct 2859887 TTTGCTCAGCGTCTCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTT- 2859829 Query 230233 TGCGCC-ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGA 230291 ||| | ||||| |||||| ||| ||| |||||||||| ||| | || ||||| Sbjct 2859828 TGCTTCGATCTTCTGGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGA 2859769 Query 230292 GTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAG-CTTATGTATTCAAAGC 230350 | | ||| ||| || |||||||| || || | | || | || ||| || | | Sbjct 2859768 GCTGATCTCTCGTGATGAGGGTCTGCA-CACCGACTTTGCTTGTCTGCTGTTCTCCCACC 2859710 Query 230351 TCCAGAACAAGC-TACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGAAAAC 230409 || | || | || || |||| ||| | | ||||| || || || || | | | Sbjct 2859709 TCAACCACCGCCCTAGCAAG-GAGATTGTCCAGAACATCATCACCGACGCCGTCGCGATC 2859651 Query 230410 GAAAAGGAGTTCATTTGTGACGCTATTCCATGTCG-CCTTATTGGCATGAACGCTGAACT 230468 || |||||||| | || ||| | || ||| ||| ||||||||||||| | || Sbjct 2859650 GAGCAGGAGTTCCTGACGGATGCTCTGCCC-GTCAACCTGCTTGGCATGAACGCCAAGCT 2859592 Query 230469 TATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACGAGAA 230528 ||| | ||||||||||| ||||| || ||||| || | || || ||||| || |||| Sbjct 2859591 CATGTGCCAGTACATCGAGTTCGTCGCTGACCGACTTCTCGTGGCTCTTGGCAACAAGAA 2859532 Query 230529 AGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGGGAAGAC 230588 |||||| | | || ||||| | || ||||| ||| ||||| || ||||| Sbjct 2859531 GTACTACAACGCCACCAATCCCTTCGACTTCATGGACAACATCTCGCTGTCCGGCAAGAC 2859472 Query 230589 CAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGAGGCCTGGTGTGATG 230637 |||||||||||| ||||||||| ||||||| |||| | | ||||| ||| Sbjct 2859471 CAACTTCTTCGAGAAGCGTGTCGGTGACTACCAGAAGGCCGGTGTCATG 2859423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823552738790