Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2 197 1e-45
seq3 136 4e-27
seq7 122 9e-23
seq1 116 4e-21
>seq2
Length=4789688
Score = 197 bits (218), Expect = 1e-45
Identities = 215/285 (75%), Gaps = 3/285 (1%)
Strand=Plus/Minus
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | |||||| | ||||||
Sbjct 2860335 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGACCTG 2860276
Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752
||||||||| ||||||| | ||| ||||||| | |||||| | ||||||
Sbjct 2860275 TCCAAGGACCTTCACGACTGGAACAACCGCCTGAACGATGATGAGCGCTACTTCATCTCC 2860216
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || ||||| |||||||| |||||| ||||||||||| || ||||| |||||
Sbjct 2860215 CACGTCCTCGCCTTCTTCGCCGCGTCCGACGGAATCGTCAACGAAAACCTGGTGGAGCGC 2860156
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| |||||| ||||| ||||||| || |||||||| || || |||||| |||
Sbjct 2860155 TTCAGCGGGGAGGTCCAGGTCCCCGAGGCTCGTTGCTTCTATGGTTTCCAGATCATGATG 2860096
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917
|||||| | ||||| || | || || ||||| ||||| |||
Sbjct 2860095 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTAC 2860051
Score = 185 bits (204), Expect = 9e-42
Identities = 312/449 (69%), Gaps = 2/449 (0%)
Strand=Plus/Minus
Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041
||||||| |||||||| | ||||| | || ||| || |||| | |||| |
Sbjct 2859934 AGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGTCCACCTTTGCTCAGCGTC 2859875
Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101
| || |||||||| || || |||||| ||||||| || ||| || || | || || |
Sbjct 2859874 TCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTTTGCTTCGATCTTCT 2859815
Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161
|||| ||||| || || || ||||| || || || ||| ||||||||| ||||| | |
Sbjct 2859814 GGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCTCGTG 2859755
Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221
| ||||||||||| ||||||||| ||| |||||||| || | || || || |
Sbjct 2859754 ATGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCCCACCTCAACCACCGCCCTA 2859695
Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281
|| || | ||| | | ||| |||||||||| ||||| ||||||||| ||||| |
Sbjct 2859694 GCAAGGAGATTGTCCAGAACATCATCACCGACGCCGTCGCGATCGAGCAGGAGTTCCTGA 2859635
Query 117282 CCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATC 117340
| || || ||||| || ||||| || | || || || | |||| || ||||||
Sbjct 2859634 CGGATGCTCTGCCCGTCAACCTGCTTGGCATGAA-CGCCAAGCTCATGTGCCAGTACATC 2859576
Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400
||||||||||| ||| | || || | | || | | | ||| |||||||| | ||
Sbjct 2859575 GAGTTCGTCGCTGACCGACTTCTCGTGGCTCTTGGCAACAAGAAGTACTACAACGCCACC 2859516
Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC 117429
|| || | ||||| ||| || ||||||
Sbjct 2859515 AATCCCTTCGACTTCATGGACAACATCTC 2859487
>seq3
Length=4355815
Score = 136 bits (150), Expect = 4e-27
Identities = 141/182 (77%), Gaps = 2/182 (1%)
Strand=Plus/Minus
Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758
||||| || || || ||||| || ||||| ||| |||||||||| | | ||||| | |
Sbjct 2043671 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGCGACACCATC 2043612
Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817
| |||| |||||| || |||| ||||| ||||| |||||| |||||||||| || ||
Sbjct 2043611 GACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCT 2043553
Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877
|||| ||| || || ||||| || || | ||||| || | ||||||||||||||||||
Sbjct 2043552 TATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCAGAA 2043493
Query 40878 GG 40879
||
Sbjct 2043492 GG 2043491
>seq7
Length=1958609
Score = 122 bits (134), Expect = 9e-23
Identities = 152/206 (74%), Gaps = 2/206 (1%)
Strand=Plus/Minus
Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759
|||| || || ||||| ||||| || |||||| | || || || | | ||||| | |
Sbjct 431154 TCGTCAAGACCCTCACCGGCAAGACTATCACCCTGGAGGTGGAGTCGAGCGACACCATCG 431095
Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818
| |||| ||||| || || | ||||| ||||| |||||| | |||||||| || ||
Sbjct 431094 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGCCTG 431036
Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878
|||| ||| ||||| ||||| || || | |||||||| |||||| ||||||||||||
Sbjct 431035 ATCTTCGCAGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTATAACATCCAGAAG 430976
Query 40879 GAGGCCACGCTGCATCTAGTGTTGCG 40904
||| ||| || || || || ||||
Sbjct 430975 GAGAGCACTCTCCACCTTGTCCTGCG 430950
Score = 118 bits (130), Expect = 1e-21
Identities = 140/187 (75%), Gaps = 2/187 (1%)
Strand=Plus/Minus
Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772
|| ||||| || |||||| | || || || | | ||||| | | | |||| |||||
Sbjct 431425 ACCGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAACG-TCAAGTC 431367
Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832
|| || | ||||| ||||| |||||| | |||||||| || | |||| |||||||||
Sbjct 431366 CAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGCTTGATCTTCGCGGGCAA 431307
Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892
||||| || |||| ||||| ||| |||||| ||||||||||||||| |||| || ||
Sbjct 431306 GCAGCTTGAGGACGGTCGCACGCTCTCCGACTATAACATCCAGAAGGAGTCCACCCTTCA 431247
Query 40893 TCTAGTG 40899
|| |||
Sbjct 431246 CCTGGTG 431240
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Minus
Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748
|||||| || ||||| || || || || || || ||||| || | || ||||| | |
Sbjct 430709 AATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACGCTGGAGGTCGAGAGCTC 430650
Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807
|||| | | |||| | ||| || || | ||||| ||||| ||||| | ||||
Sbjct 430649 TGACACAATCGACAACG-TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCACCAGACC 430591
Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867
|||| || | |||| ||||||||| ||||| || |||| ||||| ||| ||||||||
Sbjct 430590 AGCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACA 430531
Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
| |||||||||||| ||| || || || ||
Sbjct 430530 ATATCCAGAAGGAGAGCACTCTCCACCTGGT 430500
>seq1
Length=6618042
Score = 116 bits (128), Expect = 4e-21
Identities = 106/134 (79%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
||||| ||||| |||||| |||||||||| || || |||| ||| || || ||||||||
Sbjct 1741288 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAG 1741347
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|||| ||||||||| || |||||||||||||||||| | || || || || ||| ||
Sbjct 1741348 GACGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTG 1741407
Query 40903 CGCTTGAGGGGCGG 40916
||| || | || ||
Sbjct 1741408 CGCCTGCGTGGTGG 1741421
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515218987472080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |