Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2 197 1e-45 seq3 136 4e-27 seq7 122 9e-23 seq1 116 4e-21 >seq2 Length=4789688 Score = 197 bits (218), Expect = 1e-45 Identities = 215/285 (75%), Gaps = 3/285 (1%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | |||||| Sbjct 2860335 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACTGCAGAGGAGATTGACCTG 2860276 Query 116696 TCCAAGGACACGAGCGACTGGGAG---CGCTTGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||||| ||||||| | ||| ||||||| | |||||| | |||||| Sbjct 2860275 TCCAAGGACCTTCACGACTGGAACAACCGCCTGAACGATGATGAGCGCTACTTCATCTCC 2860216 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || ||||| |||||||| |||||| ||||||||||| || ||||| ||||| Sbjct 2860215 CACGTCCTCGCCTTCTTCGCCGCGTCCGACGGAATCGTCAACGAAAACCTGGTGGAGCGC 2860156 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| |||||| ||||| ||||||| || |||||||| || || |||||| ||| Sbjct 2860155 TTCAGCGGGGAGGTCCAGGTCCCCGAGGCTCGTTGCTTCTATGGTTTCCAGATCATGATG 2860096 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||| | ||||| || | || || ||||| ||||| ||| Sbjct 2860095 GAGAACATCCACTCCGAGACCTACTCCCTGCTCATTGACACCTAC 2860051 Score = 185 bits (204), Expect = 9e-42 Identities = 312/449 (69%), Gaps = 2/449 (0%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 ||||||| |||||||| | ||||| | || ||| || |||| | |||| | Sbjct 2859934 AGAAGGCTGAGTGGGCCATCAAGTGGATTCAGGACAAGGAGTCCACCTTTGCTCAGCGTC 2859875 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 | || |||||||| || || |||||| ||||||| || ||| || || | || || | Sbjct 2859874 TCGTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTTTGCTTCGATCTTCT 2859815 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||| ||||| || || || ||||| || || || ||| ||||||||| ||||| | | Sbjct 2859814 GGCTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCTCGTG 2859755 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 | ||||||||||| ||||||||| ||| |||||||| || | || || || | Sbjct 2859754 ATGAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCCCACCTCAACCACCGCCCTA 2859695 Query 117222 GCGCGGCGCGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCA 117281 || || | ||| | | ||| |||||||||| ||||| ||||||||| ||||| | Sbjct 2859694 GCAAGGAGATTGTCCAGAACATCATCACCGACGCCGTCGCGATCGAGCAGGAGTTCCTGA 2859635 Query 117282 CCGAAGCGCTGCCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATC 117340 | || || ||||| || ||||| || | || || || | |||| || |||||| Sbjct 2859634 CGGATGCTCTGCCCGTCAACCTGCTTGGCATGAA-CGCCAAGCTCATGTGCCAGTACATC 2859576 Query 117341 GAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCC 117400 ||||||||||| ||| | || || | | || | | | ||| |||||||| | || Sbjct 2859575 GAGTTCGTCGCTGACCGACTTCTCGTGGCTCTTGGCAACAAGAAGTACTACAACGCCACC 2859516 Query 117401 AACCCGCTGGACTTTATGAACCTCATCTC 117429 || || | ||||| ||| || |||||| Sbjct 2859515 AATCCCTTCGACTTCATGGACAACATCTC 2859487 >seq3 Length=4355815 Score = 136 bits (150), Expect = 4e-27 Identities = 141/182 (77%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 40699 TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTG 40758 ||||| || || || ||||| || ||||| ||| |||||||||| | | ||||| | | Sbjct 2043671 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGCGACACCATC 2043612 Query 40759 CA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACT 40817 | |||| |||||| || |||| ||||| ||||| |||||| |||||||||| || || Sbjct 2043611 GACAACG-TCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCT 2043553 Query 40818 CATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAA 40877 |||| ||| || || ||||| || || | ||||| || | |||||||||||||||||| Sbjct 2043552 TATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCAGAA 2043493 Query 40878 GG 40879 || Sbjct 2043492 GG 2043491 >seq7 Length=1958609 Score = 122 bits (134), Expect = 9e-23 Identities = 152/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || ||||| ||||| || |||||| | || || || | | ||||| | | Sbjct 431154 TCGTCAAGACCCTCACCGGCAAGACTATCACCCTGGAGGTGGAGTCGAGCGACACCATCG 431095 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | ||||| ||||| |||||| | |||||||| || || Sbjct 431094 ACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGCCTG 431036 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| ||| ||||| ||||| || || | |||||||| |||||| |||||||||||| Sbjct 431035 ATCTTCGCAGGCAAGCAGCTCGAGGATGGCCGCACCCTTTCCGACTATAACATCCAGAAG 430976 Query 40879 GAGGCCACGCTGCATCTAGTGTTGCG 40904 ||| ||| || || || || |||| Sbjct 430975 GAGAGCACTCTCCACCTTGTCCTGCG 430950 Score = 118 bits (130), Expect = 1e-21 Identities = 140/187 (75%), Gaps = 2/187 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || ||||| || |||||| | || || || | | ||||| | | | |||| ||||| Sbjct 431425 ACCGGCAAGACTATCACCCTTGAGGTGGAGTCGAGCGACACCATCGACAACG-TCAAGTC 431367 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| ||||| |||||| | |||||||| || | |||| ||||||||| Sbjct 431366 CAAGATCCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGCGCTTGATCTTCGCGGGCAA 431307 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| ||||| ||| |||||| ||||||||||||||| |||| || || Sbjct 431306 GCAGCTTGAGGACGGTCGCACGCTCTCCGACTATAACATCCAGAAGGAGTCCACCCTTCA 431247 Query 40893 TCTAGTG 40899 || ||| Sbjct 431246 CCTGGTG 431240 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || || || ||||| || | || ||||| | | Sbjct 430709 AATGCAGATCTTCGTGAAGACTCTGACCGGAAAGACCATTACGCTGGAGGTCGAGAGCTC 430650 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | |||| | ||| || || | ||||| ||||| ||||| | |||| Sbjct 430649 TGACACAATCGACAACG-TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCACCAGACC 430591 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||||||||| ||||| || |||| ||||| ||| |||||||| Sbjct 430590 AGCAGCGCTTGATCTTCGCGGGCAAGCAGCTTGAGGACGGTCGCACGCTCTCCGACTACA 430531 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 | |||||||||||| ||| || || || || Sbjct 430530 ATATCCAGAAGGAGAGCACTCTCCACCTGGT 430500 >seq1 Length=6618042 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| ||||| |||||| |||||||||| || || |||| ||| || || |||||||| Sbjct 1741288 GACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTGATCTTCGCTGGTAAGCAGCTGGAG 1741347 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| ||||||||| || |||||||||||||||||| | || || || || ||| || Sbjct 1741348 GACGGCCGCACCCTCTCGGATTACAACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTG 1741407 Query 40903 CGCTTGAGGGGCGG 40916 ||| || | || || Sbjct 1741408 CGCCTGCGTGGTGG 1741421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218987472080