Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq3 105 8e-18
seq7 102 9e-17
>seq3
Length=4355815
Score = 105 bits (116), Expect = 8e-18
Identities = 137/184 (74%), Gaps = 4/184 (2%)
Strand=Plus/Plus
Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053
|||| || || ||||| || |||||| || | || || ||||||||||||||||| |
Sbjct 2043491 CCTTCTGGATGTTGTAGTCGCTCAGAGTGCGGCCATCCTCGAGCTGCTTACCAGCGAAGA 2043550
Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112
| || ||||||||||| | || | | |||||||||| ||| | || | |||| |||
Sbjct 2043551 TAAGACGCTGCTGGTCCGGGGGGATACCCTCCTTGTCC-TGAATCTTGGCCTTGA-CGTT 2043608
Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171
| | | ||||||||||| || || |||| || ||||| || ||||| || ||||| ||
Sbjct 2043609 GTCGATGGTGTCGCTCGACTCGACGTCGAGGGTAATGGTCTTACCCGTCAGGGTCTTGAC 2043668
Query 43172 AAAG 43175
|||
Sbjct 2043669 GAAG 2043672
>seq7
Length=1958609
Score = 102 bits (112), Expect = 9e-17
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 42981 TGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGC 43040
|||| ||| |||||| ||||||||||| || | || || || | || || ||||||
Sbjct 430734 TGCAGTGTAGACTCCTTCTGAATATTGTAGTCTGACAAGGTGCGGCCATCCTCCAGCTGC 430793
Query 43041 TTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTT 43100
||||||||||| || || ||||||||||| | || | | |||||||||| ||||||
Sbjct 430794 TTACCAGCGAAGATAAGACGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGGATTTTC 430853
Query 43101 TGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTT 43160
|| | | | | || || |||||| || |||| || ||||| || || ||
Sbjct 430854 GACTTCACGTTATCGATGGTATCTGACGATTCGACTTCGAGGGTAATGGTCTTTCCGGTG 430913
Query 43161 AGCGTCTTTACAAAGATTTGCATT 43184
|| ||||| || || || ||||||
Sbjct 430914 AGGGTCTTGACGAAAATCTGCATT 430937
Score = 98.7 bits (108), Expect = 1e-15
Identities = 135/186 (73%), Gaps = 2/186 (1%)
Strand=Plus/Plus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
||||||||||| || || || || || | || || || | || || |||||||| ||
Sbjct 430968 GTGCTCTCCTTCTGGATGTTATAGTCGGAAAGGGTGCGGCCATCCTCGAGCTGCTTGCCT 431027
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106
||||| || || ||||||||||| | || | | |||||||||| ||| || |||
Sbjct 431028 GCGAAGATCAGGCGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTGGACTTG 431087
Query 43107 AGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGT 43165
| ||| | | | ||||||||||| ||||| || | ||||| || ||||| || || ||
Sbjct 431088 A-CGTTGTCGATGGTGTCGCTCGACTCCACCTCCAGGGTGATAGTCTTGCCGGTGAGGGT 431146
Query 43166 CTTTAC 43171
||| ||
Sbjct 431147 CTTGAC 431152
Score = 93.3 bits (102), Expect = 5e-14
Identities = 144/202 (71%), Gaps = 8/202 (4%)
Strand=Plus/Plus
Query 42987 GTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCA 43046
||||||||||| || |||||||| || | || || || |||| || |||||||| ||
Sbjct 430512 GTGCTCTCCTTCTGGATATTGTAGTCGGAGAGCGTGCGACCGTCCTCAAGCTGCTTGCCC 430571
Query 43047 GCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTG 43106
||||| || | ||||||||||| | || | | |||||||||| ||| || ||
Sbjct 430572 GCGAAGATCAAGCGCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTGGATCTTGCTCTTC 430631
Query 43107 AGCGTCG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAG 43162
| ||| | | | ||||| |||| || || || | ||| ||||| || || || ||
Sbjct 430632 A-CGTTGTCGATTGTGTCAGAGCTC---TCGACCTCCAGCGTAATGGTCTTTCCGGTCAG 430687
Query 43163 CGTCTTTACAAAGATTTGCATT 43184
||||| || ||||| ||||||
Sbjct 430688 AGTCTTCACGAAGATCTGCATT 430709
Score = 84.2 bits (92), Expect = 3e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027
||| | ||||| || | ||| |||||| || || || || || | || || || |
Sbjct 431234 ACGAAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGCGTGCGACC 431293
Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087
||| || |||||||| || ||||| || | ||||||||||| | || | | ||||||
Sbjct 431294 GTCCTCAAGCTGCTTGCCCGCGAAGATCAAGCGCTGCTGGTCTGGGGGGATACCCTCCTT 431353
Query 43088 GTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGA 43146
|||| ||| || |||| ||| | | | ||||||||||| ||||| || | ||||
Sbjct 431354 GTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGCTCGACTCCACCTCAAGGGTGA 431412
Query 43147 TGGTTTTGCCCGT 43159
| || ||||| ||
Sbjct 431413 TAGTCTTGCCGGT 431425
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571817364125240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |