Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1 194 1e-44 seq7 95.1 1e-14 seq3 84.2 2e-11 >seq1 Length=6618042 Score = 194 bits (214), Expect = 1e-44 Identities = 429/642 (67%), Gaps = 6/642 (1%) Strand=Plus/Plus Query 23352 TCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTT 23411 |||| || || ||||| |||| ||||||||||| || || || || | || || || | Sbjct 2615696 TCATGAAGAGGTCCGGAGTCCAGAGAGCGTAGAAGAGATCACGAGCTCTAACTTCTTCCT 2615755 Query 23412 TGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGT 23471 ||||| |||||| | |||||| ||||| || | || | ||||| ||||| |||| Sbjct 2615756 TGCCGTGGTTCTTGCGAAGATCCAAGAAGTCGAAGATATCAGAGTGCCAAGGCTCCAGGT 2615815 Query 23472 AAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGT 23531 | | || || || || || | ||| || || ||||| |||||||| | ||| ||||||| Sbjct 2615816 AGATAGCGAAAGCACCAGGGCGCTTGTTTCCTCCCTGGTCGACGTATCTGGCAGTGTTGT 2615875 Query 23532 TGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCG 23591 || | || | ||||| || || | |||||||| | || || | | | Sbjct 2615876 TGAAGACCCGGAGCATGGGGACAATTCCGTTGGAAGATCCATTGGTACCAGAGATGTAGG 2615935 Query 23592 AACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCA 23651 | || | || || | ||| | || || ||| || || || | | || || |||| Sbjct 2615936 AGCCGGTGGCGCGGATACGGTGGATGTTGAGACCAATACCACCAGCGGTCTTTGAGATCA 2615995 Query 23652 TCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCA 23711 ||| || || ||||||||||| || ||||| |||||||| || || | |||| | Sbjct 2615996 GCGCACAAGTCTTGAGAGTGTCGTAAATACCCTCAATGCTGTCTTCCTTCATGTCGACGA 2616055 Query 23712 AGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGT 23771 ||| || || | | |||| | || ||| |||| |||||| || || || | Sbjct 2616056 GGAAGCAGGAGGCGAGCTGCGGCTGAGGAGTACCGGCGTTGAACAGGGTTGGAGAAGCAT 2616115 Query 23772 GCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTC 23831 | || ||||| | ||||| || |||||||| || ||| | |||||||| || | Sbjct 2616116 GAGTGAAGTACTTCTGGGACATCAGGTTGTACGTCTCAATGACCTTCTCAATGTCATCAC 2616175 Query 23832 CGTGTATACCGATGGCGACGCGCATCATCATGTATT---GAGGTCTCTCGACCGTGACGC 23888 |||| || || | || || ||||| ||||||| | || || | | ||| | || Sbjct 2616176 CGTGGATTCCAACAGCAACACGCATAATCATGTGCTGGGGACGTTCCGCAACCTT---GC 2616232 Query 23889 CGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAA 23948 | || || | || ||||| || | || || || ||||| ||||| | |||||| | Sbjct 2616233 CATTGATCCGAAGCAAGTATGAGCGCTCCAGGGTCTTGAATCCGAAATATTGATAGTTGA 2616292 Query 23949 AGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCAT 23990 ||||||| || | ||| ||||| || ||||| || ||||| Sbjct 2616293 AGTCACGGTCATACACGATGGCGGAGTTCAATTCGTCCGCAT 2616334 >seq7 Length=1958609 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || || || || ||| |||| || ||| |||| Sbjct 430936 ATGCAGATTTTCGTCAAGACCCTCACCGGAAAGACCATTACCCTCGAAGTCGAATCGTCA 430877 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || ||| ||||||||| || | || || |||||| Sbjct 430876 GATACCATCGATAACGTGAAGTCGAAAATCCAGGACAAGGAGGGTATTCCCCCGGACCAG 430817 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 |||||||| || |||||||| || ||| |||| || Sbjct 430816 CAGCGTCTTATCTTCGCTGGTAAGCAGCTGGAGGA 430782 >seq3 Length=4355815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 126/179 (70%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| ||||| || || || || ||| ||||||| || || ||||| || Sbjct 2043671 TTCGTCAAGACCCTGACGGGTAAGACCATTACCCTCGACGTCGAGTCGAGCGACACCATC 2043612 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || ||||||||| || | || || |||||||||||||| Sbjct 2043611 GACAACGTCAAGGCCAAGATTCAGGACAAGGAGGGTATCCCCCCGGACCAGCAGCGTCTT 2043552 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || |||||||| || ||| | || || ||| ||||||| || ||||| || || Sbjct 2043551 ATCTTCGCTGGTAAGCAGCTCGAGGATGGCCGCACTCTGAGCGACTACAACATCCAGAA 2043493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766216121360