Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03- 01] 33 sequences; 31,644,316 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2 111 3e-19 seq1 100 6e-16 >seq2 Length=4789688 Score = 111 bits (122), Expect = 3e-19 Identities = 304/461 (66%), Gaps = 15/461 (3%) Strand=Plus/Minus Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977 |||||||| || || || || || |||||||| || | || || || || |||||| Sbjct 2859872 GTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTTTGCTTCGATCTTCTGG 2859813 Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037 | ||||| | ||| | ||||||||||||||| |||||| ||| | || ||| | || Sbjct 2859812 CTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCTCGTGAT 2859753 Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097 || ||||| || ||||||||| || ||||||| | | | ||| | Sbjct 2859752 GAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCCCA-------CCTCA-ACCACC 2859701 Query 102098 TCAAGAGAAAGGA----TTCTTGAA-ATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152 | || ||||| || ||| || |||| || |||||| || || || || | Sbjct 2859700 GCCCTAGCAAGGAGATTGTCCAGAACATCATCACCGACGCCGTCGCGATCGAGCAGGAGT 2859641 Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212 | || || | | | ||||| || || | | || |||||| |||| | ||| |||||| Sbjct 2859640 TCCTGACGGATGCTCTGCCCGTCAACCTGCTTGGCATGAACGCCAAGCTCATGTGCCAGT 2859581 Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA-AAGCACTATAAT 102271 |||| || || || || || ||| | || | | || | | || ||| |||| || Sbjct 2859580 ACATCGAGTTCGTCGCTGACCGACTTCTCGTGGCTCTTGG-CAACAAGAAGTACTACAAC 2859522 Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331 | ||||| |||||| ||||||||||| || || || ||||||||||| || Sbjct 2859521 GCCACCAATCCCTTCGACTTCATGGACAACATCTCGCTGTCCGGCAAGACCAACTTCTTC 2859462 Query 102332 GAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGGC 102372 || ||| | |||| || || || ||| |||||||| Sbjct 2859461 GAGAAGCGTGTCGGTGACTACCAGAAGGCCGGTGTCATGGC 2859421 >seq1 Length=6618042 Score = 100 bits (110), Expect = 6e-16 Identities = 173/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851 || ||||| ||||| ||||| | || ||| ||||| || ||||||||||||||| Sbjct 2615974 CCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAGTGTCGTAAATACCCTCAATG 2616033 Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACT-GTTCCACA 94910 || || || | | | | | |||||||| |||| || || || ||| || || Sbjct 2616034 CTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCTGCGGC-TGAGGAGTACCGGC 2616092 Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970 || ||||| || || |||||||| || || || | | ||||| || | || || || Sbjct 2616093 GTTGAACAGGGTTGGAGAAGCATGAGTGAAGTACTTCTGGGACATCAGGTTGTACGTCTC 2616152 Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030 |||||| | ||||| ||||| || || ||||| |||||||||||||||| ||| Sbjct 2616153 AATGACCTTCTCAATGTCATCACCGTGGATTCCAACAGCAACACGCATAATCATGTGCTG 2616212 Query 95031 AGGGCGCTC 95039 || || || Sbjct 2616213 GGGACGTTC 2616221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583581591515