Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq2 111 3e-19
seq1 100 6e-16
>seq2
Length=4789688
Score = 111 bits (122), Expect = 3e-19
Identities = 304/461 (66%), Gaps = 15/461 (3%)
Strand=Plus/Minus
Query 101918 GTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGG 101977
|||||||| || || || || || |||||||| || | || || || || ||||||
Sbjct 2859872 GTTGCCTTCGCCGCTGTGGAGGGCATCTTCTTCTCCGGCTCCTTTGCTTCGATCTTCTGG 2859813
Query 101978 ATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGAC 102037
| ||||| | ||| | ||||||||||||||| |||||| ||| | || ||| | ||
Sbjct 2859812 CTGAAGAAGCGTGGTCTGATGCCTGGTCTCACCTTCTCCAACGAGCTGATCTCTCGTGAT 2859753
Query 102038 GAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCA 102097
|| ||||| || ||||||||| || ||||||| | | | ||| |
Sbjct 2859752 GAGGGTCTGCACACCGACTTTGCTTGTCTGCTGTTCTCCCA-------CCTCA-ACCACC 2859701
Query 102098 TCAAGAGAAAGGA----TTCTTGAA-ATTGTCACTGAAGCCGTCCGAATTGAACAAGAAT 102152
| || ||||| || ||| || |||| || |||||| || || || || |
Sbjct 2859700 GCCCTAGCAAGGAGATTGTCCAGAACATCATCACCGACGCCGTCGCGATCGAGCAGGAGT 2859641
Query 102153 TTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGT 102212
| || || | | | ||||| || || | | || |||||| |||| | ||| ||||||
Sbjct 2859640 TCCTGACGGATGCTCTGCCCGTCAACCTGCTTGGCATGAACGCCAAGCTCATGTGCCAGT 2859581
Query 102213 ACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAA-AAGCACTATAAT 102271
|||| || || || || || ||| | || | | || | | || ||| |||| ||
Sbjct 2859580 ACATCGAGTTCGTCGCTGACCGACTTCTCGTGGCTCTTGG-CAACAAGAAGTACTACAAC 2859522
Query 102272 GTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTT 102331
| ||||| |||||| ||||||||||| || || || ||||||||||| ||
Sbjct 2859521 GCCACCAATCCCTTCGACTTCATGGACAACATCTCGCTGTCCGGCAAGACCAACTTCTTC 2859462
Query 102332 GAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATGGC 102372
|| ||| | |||| || || || ||| ||||||||
Sbjct 2859461 GAGAAGCGTGTCGGTGACTACCAGAAGGCCGGTGTCATGGC 2859421
>seq1
Length=6618042
Score = 100 bits (110), Expect = 6e-16
Identities = 173/249 (69%), Gaps = 2/249 (1%)
Strand=Plus/Plus
Query 94792 CCTCCAGCAGTCTTGGAGATGATTGCCGCCTCCTTAAGAGTATCATAAATACCCTCAATG 94851
|| ||||| ||||| ||||| | || ||| ||||| || |||||||||||||||
Sbjct 2615974 CCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAGTGTCGTAAATACCCTCAATG 2616033
Query 94852 CTATCATCTTGAAGGCCCAGAAGGAAGCACGAGGAAAGTTGGGGTGTGACT-GTTCCACA 94910
|| || || | | | | | |||||||| |||| || || || ||| || ||
Sbjct 2616034 CTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCTGCGGC-TGAGGAGTACCGGC 2616092
Query 94911 ATTAAACAGTGTGGGGGAAGCATGGGTAAAATAGTGCCTCGACATGAGATCATATGTTTC 94970
|| ||||| || || |||||||| || || || | | ||||| || | || || ||
Sbjct 2616093 GTTGAACAGGGTTGGAGAAGCATGAGTGAAGTACTTCTGGGACATCAGGTTGTACGTCTC 2616152
Query 94971 AATGACAGATTTGATGTCTGATCCGTGAATGCCGACAGCCACACGCATAATCATGTCCTG 95030
|||||| | ||||| ||||| || || ||||| |||||||||||||||| |||
Sbjct 2616153 AATGACCTTCTCAATGTCATCACCGTGGATTCCAACAGCAACACGCATAATCATGTGCTG 2616212
Query 95031 AGGGCGCTC 95039
|| || ||
Sbjct 2616213 GGGACGTTC 2616221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583581591515
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |