Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thermoascus_20crustaceus_20[genbank_20GCA_5F001599835.1_202016-03-
01] 33 sequences; 31,644,316 total letters
Query= NC_003310.1
Length=196858
Score E
Sequences producing significant alignments: (Bits) Value
seq1 165 1e-35
seq2 113 6e-20
>seq1
Length=6618042
Score = 165 bits (182), Expect = 1e-35
Identities = 370/553 (67%), Gaps = 2/553 (0%)
Strand=Plus/Plus
Query 63248 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 63307
||| || |||| ||| || || ||||| ||||| || ||| |||| ||||| ||
Sbjct 2615670 CCAGTCACCGTTCGCCTCGACACGCTTCATGAAGAGGTCCGGAGTCCAGAGAGCGTAGAA 2615729
Query 63308 TAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 63367
||||| | | |||| ||| || || || ||||| |||||| | ||| | |
Sbjct 2615730 GAGATCACGAGCTCTAACTTCTTCCTTGCCGTGGTTCTTGCGAAGATCCAAGAAGTCGAA 2615789
Query 63368 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCC 63427
|||||||| ||||| || |||| ||| || || | | | ||||| || |||||||||||
Sbjct 2615790 GATATCAGAGTGCCAAGGCTCCAGGTAGATAGCGAAAGCACCAGGGCGCTTGTTTCCTCC 2615849
Query 63428 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGA 63487
||| || | |||||| || ||||| || | || | | ||| || | ||| ||||| ||
Sbjct 2615850 CTGGTCGACGTATCTGGCAGTGTTGTTGAAGACCCGGAGCATGGGGACAATTCCGTTGGA 2615909
Query 63488 TATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATATTACTAATTGATAGACC 63547
||||||||||| ||||| ||| || |||| || ||| || |||||
Sbjct 2615910 AGATCCATTGGTACCAGAGATGTAGGAGCCGGTGGCGCGGATACGGTGGATGTTGAGACC 2615969
Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607
|| || || || | || ||||| | || || || | ||||| || || || ||
Sbjct 2615970 AATACCACCAGCGGTCTTTGAGATCAGCGCACAAGTCTTGAGAGTGTCGTAAATACCCTC 2616029
Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667
||||| || || |||||| | || || ||| | | || | ||| ||| ||
Sbjct 2616030 AATGCTGTCTTCCTTCATGTCGACGAGGAAGCAGGAGGCGAGCTGCGGCTGAGGAGTACC 2616089
Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727
|| || || | ||| |||||||| || || || | || | || | || ||||||||
Sbjct 2616090 GGCGTTGAACAGGGTTGGAGAAGCATGAGTGAAGTACTTCTGGGACATCAGGTTGTACGT 2616149
Query 63728 CTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAACATGT 63786
|||||| | || || || || | || ||||| || || |||||||| | |||||
Sbjct 2616150 CTCAATGACCTTCTCAATGTCATCACCG-TGGATTCCAACAGCAACACGCATAATCATGT 2616208
Query 63787 GCTGAGGTCTTTC 63799
|||| || | |||
Sbjct 2616209 GCTGGGGACGTTC 2616221
>seq2
Length=4789688
Score = 113 bits (124), Expect = 6e-20
Identities = 156/218 (72%), Gaps = 3/218 (1%)
Strand=Plus/Plus
Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632
|||| || ||| || || ||| |||||||||||| || | | || | ||||| ||
Sbjct 2859718 AACAGCAGACAAGCAAAGTCGGTGTGCAGACCCTCATCACGAGAGATCAGCTCGTTGGAG 2859777
Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692
|| ||||| || ||||| || |||||||| || ||||| || || ||||| || || |||
Sbjct 2859778 AAGGTGAGACCAGGCATCAGACCACGCTTCTTCAGCCAGAAGATCGAAGCAAAGGAGCCG 2859837
Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG---CG 33749
|| |||||||| || || || || || ||||||| || | || || | || |
Sbjct 2859838 GAGAAGAAGATGCCCTCCACAGCGGCGAAGGCAACGAGACGCTGAGCAAAGGTGGACTCC 2859897
Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTT 33787
|||| || |||||||| ||||| || ||||||||
Sbjct 2859898 TTGTCCTGAATCCACTTGATGGCCCACTCAGCCTTCTT 2859935
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629817340200240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |